CX296506
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.542e-28 Identity = 69/166 (41.57%), Postives = 89/166 (53.61%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEF-ELEKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +A S +S+A A S V P LK PA K + A+ M VW P K FET SYLPPLSDE + ++ Y++ +GWIPCLEF E +K +V E G YYD RYWTMWKLPM+GC D QVL+E+ K +P ++VR+ Sbjct: 5 IAKSSVSAAVARPAR-------SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRL 152 HSP 2 Score: 25.409 bits (54), Expect = 3.542e-28 Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 + FDN++QVQ + F+ +P Sbjct: 153 VAFDNQKQVQIMGFLVQRP 171
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.004e-28 Identity = 68/166 (40.96%), Postives = 89/166 (53.61%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEF-ELEKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +A S +S+A A S V P LK PA K + A+ M VW P K FET SYLPPL+DE + ++ Y++ +GWIPCLEF E +K +V E G YYD RYWTMWKLPM+GC D QVL+E+ K +P ++VR+ Sbjct: 5 IAKSSVSAAVARPAR-------SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRL 152 HSP 2 Score: 25.409 bits (54), Expect = 6.004e-28 Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 + FDN++QVQ + F+ +P Sbjct: 153 VAFDNQKQVQIMGFLVQRP 171
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 6.011e-28 Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 1 Query: 220 KVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFE------LEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 KVW P K++ET SYLPPL+++ + +++ Y+I +GW PCLEF + R S GYYD RYWTMWKLPM+GCTD +QVL+EV Q +P+ ++R+ Sbjct: 30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRL 135 HSP 2 Score: 28.1054 bits (61), Expect = 6.011e-28 Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 + FDN +QVQC+ F+ +P Sbjct: 136 VAFDNVKQVQCMGFLVQRP 154
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.031e-27 Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 1 Query: 349 ELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 ELE G+VYREH +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RI Sbjct: 1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRI 57 HSP 2 Score: 41.2022 bits (95), Expect = 1.031e-27 Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPP 580 IGFDN RQVQCISFIA KPP Sbjct: 58 IGFDNNRQVQCISFIAYKPP 77
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25 Identity = 64/171 (37.43%), Postives = 88/171 (51.46%), Query Frame = 1 Query: 148 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 FP K N ASN +C M VW P K FET SYLPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R+ C A R++ L + P + DY Sbjct: 22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 175
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24 Identity = 63/176 (35.80%), Postives = 87/176 (49.43%), Query Frame = 1 Query: 127 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 G SA P + A N R M VW P K FET SYLPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R+ C A R++ L + P + DY Sbjct: 15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 174
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.690e-24 Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 M VW P K FET SYLPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL ++ K +P +++R+ Sbjct: 44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRL 150 HSP 2 Score: 23.483 bits (49), Expect = 4.690e-24 Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = 2 Query: 527 FDNKRQVQCISFIAAKPP 580 FD RQVQ F+ +PP Sbjct: 153 FDANRQVQICGFLVHRPP 170
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24 Identity = 65/190 (34.21%), Postives = 93/190 (48.95%), Query Frame = 1 Query: 88 ASLAQASMVAPFTGLKSSSAFPATKKTNNDITS-IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 A++ ++V G SS+ P S +A R M VW P K FET SYLPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R+ C A R++ L + P DY Sbjct: 3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPTATDY 176
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24 Identity = 58/156 (37.18%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 193 SNG--GRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFE-LEKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 SNG + + M VW P K FET SYLPPL+D+ + K++ Y++R+ W PCLEF ++ +V ++ G Y D RYWTMWKLPM+GC D +QVL E+ K +P +++R+ C A R++ L + P + DY Sbjct: 26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPESATDY 167
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.165e-23 Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 M VW P K FET SYLPPL+DE + K++ Y++ + W PCLEF ++ + E+ + G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R+ C A R++ L + P + DY Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 174 The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bpback to top |