CX296509

Overview
NameCX296509
Unique NameCX296509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.812e-32
Identity = 79/211 (37.44%), Postives = 126/211 (59.72%), Query Frame = 1
Query:   22 IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAG-QGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIF 651
            I +M+ SY+++P+CLILA++PAN D+A SDA+++A   DP G RT G++TKLD+MD+GT+A +++ G+   L+  +VG+VNRSQ DI  N  +  A   E ++F + P Y  LA R G   LAK L+++L   I++ +P + S I++ +  + +E    G      AG Q   +L +   + + F   ++G           GGARI+ IF
Sbjct:  163 IESMVRSYVEKPNCLILAISPANQDIATSDAMKLAKEVDPIGDRTFGVLTKLDLMDKGTNALDVINGRSYKLKYPWVGIVNRSQADINKNVDMMVARRKEREYFETSPDYGHLATRMGSEYLAKLLSKLLESVIRSRIPSILSLINNNIEELERELDQLGRPIAIDAGAQLYTILGMCRAFEKIFKEHLDGGR--------PGGARIYGIF 365          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29
Identity = 76/211 (36.02%), Postives = 117/211 (55.45%), Query Frame = 1
Query:   22 IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE-ITESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIF 651
            I  M+ SY+++P+C+ILA++PAN D+A SDA+++A   DP G RT G+ TKLDIMD+GTD  ++L G+   L+  +VG+VNRSQ DI     +  A   E+++F + P Y  LA R G   LAK L+Q L   I+  +P + + I+ ++  +  E    G  I      Q   +L +   +   F   ++G           GG RI+ +F
Sbjct:  163 IENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPTGERTFGVATKLDIMDKGTDCLDVLEGRSYRLQHPWVGIVNRSQADINKRVDMIAARRKEQEYFETSPEYGHLASRMGSEYLAKLLSQHLETVIRQKIPSIVALINKSIDEINAELDRIGRPIAVDSGAQLYTILELCRAFDRVFKEHLDGGR--------PGGDRIYGVF 365          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 75/213 (35.21%), Postives = 122/213 (57.28%), Query Frame = 1
Query:   22 IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAG-QGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQS 657
            I +M+ +Y+ +P+C+ILA++PAN D+A SDA+++A   DP G RT G++TKLD+MD+GT+A  +L G+   L+  +VG+VNRSQ DI  N  +  A   E ++F + P Y  LA + G   LAK L++ L   I+  +P + S I+ ++  + +E    G      AG Q   +L +   + + F   ++G           GG RI+ +F +
Sbjct:  168 IESMVRTYVDKPNCIILAISPANQDIATSDAIKLAKDVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMMLARRKEREYFDTSPDYGHLASKMGSEYLAKLLSKHLESVIRTRIPSILSLINKSIEELERELDRMGRPVAVDAGAQLYTILEMCRAFDKIFKEHLDGGR--------PGGDRIYGVFDN 372          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX2_RAT (Interferon-induced GTP-binding protein Mx2 OS=Rattus norvegicus GN=Mx2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.405e-26
Identity = 70/202 (34.65%), Postives = 121/202 (59.90%), Query Frame = 1
Query:    4 ADTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            AD   +I+ +I +YI++   + L V P+N D+A ++AL +A   DPDG RTIGI+TK D++DRGT+ +  +++   V  L+ GY+ V  R Q+DI    S+ +AL  E+ FF+  P +  L +  +  VP LA++L   L+ HI   LP L+++I  +  S ++E   YG +I E +  +   L+  ++ +++  + +VEG+
Sbjct:  190 ADIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQKVDPDGDRTIGILTKPDLVDRGTEDKVVDVVRNLVCHLKKGYMIVKCRGQQDIQEQLSLAEALQKEQVFFKEHPQFRALLEDGKATVPCLAERLTMELISHICKSLPLLENQIKESHQSTSEELQKYGADIPEDENEKTLFLIEKINAFNQDITAIVEGE 391          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX1_HORSE (Interferon-induced GTP-binding protein Mx1 OS=Equus caballus GN=MX1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.405e-26
Identity = 68/202 (33.66%), Postives = 120/202 (59.41%), Query Frame = 1
Query:    4 ADTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            AD   +I+T+I  YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++D+GT+ +  +++   +  L+ GY+ V  R Q+DI    S+ +AL  E+ FF   P + GL +  R  VP LA++L   L+ HI   LP L+++I  +  +++ E   YG +I E +  +   L+  ++ +++  +  V+G+
Sbjct:  192 ADIGRQIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEEQVVDVVRNLICHLKKGYMIVKCRGQQDIQDRLSLAEALQREKAFFEENPYFRGLLEEGRASVPCLAERLTTELITHISKSLPLLENQIKESYQNLSDELQKYGTDIPEDETEKTFFLIVKITTFNQNITSFVQGE 393          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX3_RAT (Interferon-induced GTP-binding protein Mx3 OS=Rattus norvegicus GN=Mx3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 69/202 (34.16%), Postives = 121/202 (59.90%), Query Frame = 1
Query:    4 ADTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            +D   +I+ +I +YI++   + L V P+N D+A ++AL +A   DPDG RTIGI+TK D++DRGT+ +  +++   V  L+ GY+ V  R Q+DI    S+ +AL  E+ FF+  P +  L +  +  VP LA++L   L+ HI   LP L+++I  +  S ++E   YG +I E +  +   L+  ++ +++  + +VEG+
Sbjct:  190 SDIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDRGTEDKVVDVVRNLVCHLKKGYMIVKCRGQQDIQEQLSLAEALQKEQVFFKEHPQFRALLEDGKATVPCLAERLTMELISHICKSLPLLENQIKESHQSTSEELQKYGADIPEDENEKTLFLIEKINAFNQDITAIVEGE 391          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX2_MOUSE (Interferon-induced GTP-binding protein Mx2 OS=Mus musculus GN=Mx2 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 68/202 (33.66%), Postives = 121/202 (59.90%), Query Frame = 1
Query:    4 ADTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            AD   +I+ +I +YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++DRGT+ +  +++   V  L+ GY+ V  R Q+DI    S+ +AL  E+ FF+  P +  L +  +  VP LA++L   L+ HI   LP L+++I  +  S ++E   YG +I E  + +   L+  ++ +++  + +V+G+
Sbjct:  185 ADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDRGTEDKVVDVVRNLVYHLKKGYMIVKCRGQQDIQEQLSLTEALQNEQIFFKEHPHFRVLLEDGKATVPCLAERLTAELISHICKSLPLLENQIKESHQSASEELQKYGMDIPEDDSEKTFFLIEKINAFNQDITALVQGE 386          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX1_CANFA (Interferon-induced GTP-binding protein Mx1 OS=Canis familiaris GN=MX1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 69/202 (34.16%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    4 ADTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            AD   + + +I  YI +   + L V P N D+A ++AL +A   DPDG RTIGI+TK D++DRGT+ +  ++    V  L+ GY+ V  R Q+DI    S+ +AL  E+ FF   P +  L +  R  VP LA+KL   L+ HI   LP L+++I      + +E   YG ++ E +  +   L++ L+ +++  S +++G+
Sbjct:  188 ADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDRGTEGKVVDVAQNLVCHLKKGYMIVKCRGQQDIQDQVSLAEALQKEKDFFEDHPHFRVLLEEGRATVPNLAEKLTSELITHICKTLPLLENQIKENHEKITEELQKYGSDVPEDEHEKMFFLIDKLNAFNQDISSLIQGE 389          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX1_PONAB (Interferon-induced GTP-binding protein Mx1 OS=Pongo abelii GN=MX1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 65/202 (32.18%), Postives = 120/202 (59.41%), Query Frame = 1
Query:    4 ADTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            AD   +I+T+I  YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++D+GT+ +  +++   V  L+ GY+ V  R Q++I    S+ +AL  E+ FF   P +  L +  +  VP LA+KL   L+ HI   LP L+++I  +   + +E   YG ++ E +  +   L++ ++ +++  + +++G+
Sbjct:  192 ADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFEDHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIRESHQRITEELQKYGVDVPEDENEKMFFLIDKINAFNQDITALIQGE 393          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX1_PIG (Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa GN=MX1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 69/205 (33.66%), Postives = 118/205 (57.56%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD------ARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            D E +I+++I  YI +   + L V P N D+A ++AL++A   DP+G RTIGI+TK D++D+GT+      ARNL    V  L+ GY+ V  R Q+DI    S+  AL  E+ FF +   +  L +  R  +P LA++L   L+ HI   LP L+++I  +   + +E   YG +I E ++G+   L++ +  ++   + +++G+
Sbjct:  194 DIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDKGTEDKIVDVARNL----VFHLKKGYMIVKCRGQQDIQEQLSLAKALQKEQAFFENHAHFRDLLEEGRATIPCLAERLTSELIMHICKTLPLLENQIKESHQKITEELQKYGSDIPEDESGKMFFLIDKIDAFNSDITALIQGE 394          
The following BLAST results are available for this feature:
BLAST of CX296509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
DRP1D_ARATH7.812e-3237.44Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DRP1C_ARATH1.629e-2936.02Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH2.779e-2935.21Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
MX2_RAT6.405e-2634.65Interferon-induced GTP-binding protein Mx2 OS=Ratt... [more]
MX1_HORSE6.405e-2633.66Interferon-induced GTP-binding protein Mx1 OS=Equu... [more]
MX3_RAT1.427e-2534.16Interferon-induced GTP-binding protein Mx3 OS=Ratt... [more]
MX2_MOUSE2.061e-2433.66Interferon-induced GTP-binding protein Mx2 OS=Mus ... [more]
MX1_CANFA2.061e-2434.16Interferon-induced GTP-binding protein Mx1 OS=Cani... [more]
MX1_PONAB2.691e-2432.18Interferon-induced GTP-binding protein Mx1 OS=Pong... [more]
MX1_PIG2.691e-2433.66Interferon-induced GTP-binding protein Mx1 OS=Sus ... [more]

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Properties
Property NameValue
Genbank descriptionC05142A12SK FerrChloL1 Citrus clementina cDNA clone C05142A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296509 ID=CX296509; Name=CX296509; organism=Citrus clementina; type=EST; length=663bp
GAGGCTGATACTGAAGCACGAATTAGAACGATGATTATGTCATATATCAA
GCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAGATTTGG
CAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGATGGTTAT
AGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGGTACTGA
TGCCCGTAATTTGTTACTCGGAAAAGTGATTCCGCTTCGGCTTGGTTATG
TTGGTGTTGTGAATAGGAGTCAGGAGGATATTATGTTCAACCGGAGTATC
AAGGATGCACTAGTGGCTGAGGAAAAGTTCTTCCGTAGTCGCCCTGTATA
TAATGGTCTAGCAGATCGTTGTGGTGTTCCTCAGTTGGCAAAGAAGTTGA
ACCAGATTCTTGTACAACATATCAAGGCTATACTTCCTGGGTTGAAGTCA
CGCATTAGCTCTGCATTAGTTTCTGTTGCAAAGGAGCATGCAAGCTACGG
GGAAATCACAGAATCAAAGGCTGGTCAGGGAGCTCTACTCCTGAATATTC
TTTCTAAATACTCCGAAGCATTTTCTTNCATGGTGGAGGGAAAGAATGAA
GAAATGTCAACATCTGAGCTTTCTGGCGGGGCACGAATTCACTATATTTT
TCAGTCAATCTTT
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