CX296510

Overview
NameCX296510
Unique NameCX296510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 99/152 (65.13%), Postives = 124/152 (81.58%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 7.665e-54
Identity = 99/152 (65.13%), Postives = 124/152 (81.58%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.001e-53
Identity = 96/134 (71.64%), Postives = 117/134 (87.31%), Query Frame = -3
Query:  257 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQH 658
            SLV  +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S+ LD  +RDDLERL+KIR HRGLRHYWGLRVRGQH
Sbjct:    3 SLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWGLRVRGQH 136          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.230e-53
Identity = 96/152 (63.16%), Postives = 124/152 (81.58%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +  E++ ++ +++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERL+KIR HRG+RHYWGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_DROME (40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.726e-51
Identity = 95/152 (62.50%), Postives = 120/152 (78.95%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  E FQHILR++NTN+DGK+K+  A+T+IKG+GRR +NIV KKADVD+ KRAGE +  E+D ++ +++NP Q+K+P+WFLNRQKD  DGKY Q+ S+ LD KLRDDLERL+KIR+HRGLRHYWGLRVRGQH            VSKK+
Sbjct:    1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.308e-50
Identity = 96/152 (63.16%), Postives = 118/152 (77.63%), Query Frame = -3
Query:  206 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 661
            MSLV  ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+  EL+ ++ ++ NP QFKIP WFLNRQKD  DGK  Q+++N +D KLR+DLERL+KI+ HRGLRH   LRVRGQH            VSKK+
Sbjct:    1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQHTKTTGRRGKTVGVSKKK 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 85/133 (63.91%), Postives = 111/133 (83.46%), Query Frame = -3
Query:  260 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 658
            SLV   +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS  E++ L  ++ +PRQ+ IP WFLNRQKD KDGKYS  ++N +D+K R+DLERL+KIR HRG+RH++GLRVRGQ
Sbjct:    4 SLVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKDEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRHHFGLRVRGQ 136          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_YEAST (40S ribosomal protein S18 OS=Saccharomyces cerevisiae GN=RPS18A PE=1 SV=4)

HSP 1 Score: 186.808 bits (473), Expect = 9.075e-47
Identity = 88/137 (64.23%), Postives = 111/137 (81.02%), Query Frame = -3
Query:  257 MSLVANED--FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQH 661
            MSLV  E   FQHILR+LNTNVDG  KI++ALT+IKG+GRR +N+VCKKADVD++KRAGEL+  EL+ ++ ++ NP  +KIP WFLNRQ D  DGK    ++N ++ KLRDDLERL+KIR HRG+RH+WGLRVRGQH
Sbjct:    1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_ENTHI (40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.021e-42
Identity = 75/134 (55.97%), Postives = 109/134 (81.34%), Query Frame = -3
Query:  257 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQH 658
            ++ +  +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG ++ AE++ ++ ++     +KIP WFLNRQKD KDGK SQ+++NA++ +LR+D+E L+K+R HRGLRHYWGLRVRGQ+
Sbjct:    3 TVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQN 136          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.115e-27
Identity = 54/131 (41.22%), Postives = 87/131 (66.41%), Query Frame = -3
Query:  260 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 652
            +A ++F+H++R+   +VDG   I  ALT I+GIG+  A  +CK  D+D + + G +    +  +  V+ NP++F IP+WFLNR+ DY+ G+   ++ + L+M LRDDL R++ IR+++G RH  GL VRGQ
Sbjct:    1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIRSYKGKRHEVGLPVRGQ 131          
The following BLAST results are available for this feature:
BLAST of CX296510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_CANFA7.665e-5465.1340S ribosomal protein S18 OS=Canis familiaris GN=R... [more]
RS18_BOVIN7.665e-5465.1340S ribosomal protein S18 OS=Bos taurus GN=RPS18 P... [more]
RS18_CHLRE1.001e-5371.6440S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_SPOFR2.230e-5363.1640S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_DROME2.726e-5162.5040S ribosomal protein S18 OS=Drosophila melanogast... [more]
RS18_SCHPO2.308e-5063.1640S ribosomal protein S18 OS=Schizosaccharomyces p... [more]
RS18_DICDI1.829e-4763.9140S ribosomal protein S18 OS=Dictyostelium discoid... [more]
RS18_YEAST9.075e-4764.2340S ribosomal protein S18 OS=Saccharomyces cerevis... [more]
RS18_ENTHI3.021e-4255.9740S ribosomal protein S18 OS=Entamoeba histolytica... [more]
RS13_METST6.115e-2741.2230S ribosomal protein S13P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionC05142B04SK FerrChloL1 Citrus clementina cDNA clone C05142B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296510 ID=CX296510; Name=CX296510; organism=Citrus clementina; type=EST; length=684bp
AAATATATGTTGCAAAACATCTGAATAAAAATATTACCATAGAGAAAATA
ATAGATAAAAGACAGACAGTTCAAATGCTTAAAACCCATCCAAAGAAAAG
AAAATAAATCTAATATTGTCTGATGCAAATGTTCAGCAATAGCAAGTCCA
AACTCTTCCTGAACATGTGTATAGATTGTTCAAAACATTGATAAAGGACA
GCTCAACGCTTCTTGGAGACACCAACAGTCTTTCCACGACGGCCGGTGGT
CTTGGTGTGTTGTCCACGGACACGAAGACCCCAGTAGTGCCTGAGACCAC
GGTGGTTCCTGATCTTCCTCAGACGCTCCAAGTCATCTCTCAACTTCATG
TCCAGTGCATTGGATACAACCTGAGAATACTTTCCATCCTTGTAATCCTT
CTGTCTGTTCAAGAACCAATCAGGGATTTTAAACTGTCGGGGATTTGCAA
CAACGACCATGAGATTGTCAAGTTCAGCAGCAGATAGTTCACCGGCCCTC
TTGTTCATGTCAACATCAGCTTTCTTGCAAACGATGTTAGCCAGTCGCCT
TCCAATACCCTTAATTGAAGTAAGAGCAAACATAATCTTCTGCTTCCCGT
CGACGTTAGTGTTCAGCACACGCAAAATGTGCTGAAAATCTTCGTTCGCC
ACCAGAGACATTTTCGATTGTGAGGATTGATGAT
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