CX296510

Overview
NameCX296510
Unique NameCX296510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26
Identity = 53/128 (41.41%), Postives = 86/128 (67.19%), Query Frame = -3
Query:  260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643
            E+F+H++R+   ++DG + +  ALTSIKG+G+ L+  +   A  D+N+R G LS  E++ L   + NP ++ IP W +NR+ DY+ G+   ++ + L+M LR+DL R+RK R+++G RH  GL VRGQ
Sbjct:    3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHELGLPVRGQ 130          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 52/128 (40.62%), Postives = 87/128 (67.97%), Query Frame = -3
Query:  260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643
            +DF+H++R+   +VDG + I  ALT IKG+G  L+  +C+  D+D   + G ++  ++  +  ++ NP++F IP+W LNR++DY+ G+   ++ + LDM LRDDL R++K R+++G RH  GL VRGQ
Sbjct:    3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTRSYKGRRHEAGLPVRGQ 130          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25
Identity = 58/145 (40.00%), Postives = 91/145 (62.76%), Query Frame = -3
Query:  206 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 640
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++  +  ++ +P    IP W +NR KDY+ GK   +++  LDM +R+D+ RLR+IR +RG+RH  GL VRGQ             VSKK+
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSKKK 147          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 54/127 (42.52%), Postives = 87/127 (68.50%), Query Frame = -3
Query:  260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640
            +F+HI+RV   ++DG +++ +ALT+IKGIG   A +VC+ A +D   +AG L+  ++  +  ++A+P    IP W +NR KDY+ G+   +++  LDM +R+D+ RLR+IR +RG+RH  GL VRGQ
Sbjct:    3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 53/127 (41.73%), Postives = 86/127 (67.72%), Query Frame = -3
Query:  260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640
            DF+HI+RV   ++DG +++ +ALT+IKG+G   A +VC+ A +D   +AG L+  ++  +  ++ +P    IP W +NR KDY+ G+   +++  LDM +R+D+ RLR+IR +RG+RH  GL VRGQ
Sbjct:    3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24
Identity = 53/133 (39.85%), Postives = 89/133 (66.92%), Query Frame = -3
Query:  260 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA--NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 652
            +A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A  +C++  +D  K+ GELS  E++ +   +   +  +  IP W  NRQKDY+ G+   +V   L+M ++ D++RL+KIR +RG+RH  GL VRGQ
Sbjct:    1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIRAYRGIRHELGLPVRGQ 133          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24
Identity = 53/132 (40.15%), Postives = 86/132 (65.15%), Query Frame = -3
Query:  260 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 655
            +++ + +++I+R+L T++ G  K+ + L  +KGIG  LA  +C+   +D NKR G L+ AE++ +   +ANP    IP W LNR+KDY+ GK   +V   L   ++ D+ER ++IR+ RG+RH  GL+VRGQ
Sbjct:    1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRGIRHALGLKVRGQ 132          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 50/129 (38.76%), Postives = 85/129 (65.89%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            NE+FQ+I+R+ N +++G++ +  AL  +KGIG RL+  + KK D+D ++R GEL   +++ L   +       IP W  N ++D   GK   +VSN LD+++ DD+  ++K+R+++G+RH  GL+VRGQ
Sbjct:    8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRHERGLKVRGQ 136          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 54/128 (42.19%), Postives = 84/128 (65.62%), Query Frame = -3
Query:  260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643
            E+F+HI+RV   ++DG +++ +ALT IKGIG   A +V + A +D   +AG L+  ++  +  ++A+P    IP W +NR KDY+ GK   +++  L M  R+D+ RLR+IR +RG+RH  GL VRGQ
Sbjct:    3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQ 130          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 51/129 (39.53%), Postives = 84/129 (65.12%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            N +F++++RV  T++DG +K++ AL  I G+G  +A  + + A +D NK AG L+  E+  +  V+A+P +F IP W  NR+KDY  G+   V+ + L +  ++D+ RL++IR +RG+RH  GL  RGQ
Sbjct:    3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQ 131          
The following BLAST results are available for this feature:
BLAST of CX296510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_METTH1.779e-2641.4130S ribosomal protein S13P OS=Methanobacterium the... [more]
RS13_METS31.153e-2540.6330S ribosomal protein S13P OS=Methanobrevibacter s... [more]
RS13_PYRHO2.569e-2540.0030S ribosomal protein S13P OS=Pyrococcus horikoshi... [more]
RS13_PYRFU1.275e-2442.5230S ribosomal protein S13P OS=Pyrococcus furiosus ... [more]
RS13_PYRAB1.665e-2441.7330S ribosomal protein S13P OS=Pyrococcus abyssi GN... [more]
RS13_METKA4.846e-2439.8530S ribosomal protein S13P OS=Methanopyrus kandler... [more]
RS13_HYPBU4.846e-2440.1530S ribosomal protein S13P OS=Hyperthermus butylic... [more]
RS13_PICTO1.410e-2338.7630S ribosomal protein S13P OS=Picrophilus torridus... [more]
RS13_PYRKO1.841e-2342.1930S ribosomal protein S13P OS=Pyrococcus kodakarae... [more]
RS13_METJA2.405e-2339.5330S ribosomal protein S13P OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionC05142B04SK FerrChloL1 Citrus clementina cDNA clone C05142B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296510 ID=CX296510; Name=CX296510; organism=Citrus clementina; type=EST; length=684bp
AAATATATGTTGCAAAACATCTGAATAAAAATATTACCATAGAGAAAATA
ATAGATAAAAGACAGACAGTTCAAATGCTTAAAACCCATCCAAAGAAAAG
AAAATAAATCTAATATTGTCTGATGCAAATGTTCAGCAATAGCAAGTCCA
AACTCTTCCTGAACATGTGTATAGATTGTTCAAAACATTGATAAAGGACA
GCTCAACGCTTCTTGGAGACACCAACAGTCTTTCCACGACGGCCGGTGGT
CTTGGTGTGTTGTCCACGGACACGAAGACCCCAGTAGTGCCTGAGACCAC
GGTGGTTCCTGATCTTCCTCAGACGCTCCAAGTCATCTCTCAACTTCATG
TCCAGTGCATTGGATACAACCTGAGAATACTTTCCATCCTTGTAATCCTT
CTGTCTGTTCAAGAACCAATCAGGGATTTTAAACTGTCGGGGATTTGCAA
CAACGACCATGAGATTGTCAAGTTCAGCAGCAGATAGTTCACCGGCCCTC
TTGTTCATGTCAACATCAGCTTTCTTGCAAACGATGTTAGCCAGTCGCCT
TCCAATACCCTTAATTGAAGTAAGAGCAAACATAATCTTCTGCTTCCCGT
CGACGTTAGTGTTCAGCACACGCAAAATGTGCTGAAAATCTTCGTTCGCC
ACCAGAGACATTTTCGATTGTGAGGATTGATGAT
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