CX296510
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METTH (30S ribosomal protein S13P OS=Methanobacterium thermoautotrophicum GN=rps13p PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.779e-26 Identity = 53/128 (41.41%), Postives = 86/128 (67.19%), Query Frame = -3 Query: 260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643 E+F+H++R+ ++DG + + ALTSIKG+G+ L+ + A D+N+R G LS E++ L + NP ++ IP W +NR+ DY+ G+ ++ + L+M LR+DL R+RK R+++G RH GL VRGQ Sbjct: 3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIERLEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTRSYKGRRHELGLPVRGQ 130
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METS3 (30S ribosomal protein S13P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps13p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25 Identity = 52/128 (40.62%), Postives = 87/128 (67.97%), Query Frame = -3 Query: 260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643 +DF+H++R+ +VDG + I ALT IKG+G L+ +C+ D+D + G ++ ++ + ++ NP++F IP+W LNR++DY+ G+ ++ + LDM LRDDL R++K R+++G RH GL VRGQ Sbjct: 3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLKIEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTRSYKGRRHEAGLPVRGQ 130
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRHO (30S ribosomal protein S13P OS=Pyrococcus horikoshii GN=rps13p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25 Identity = 58/145 (40.00%), Postives = 91/145 (62.76%), Query Frame = -3 Query: 206 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 640 DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ + ++ +P IP W +NR KDY+ GK +++ LDM +R+D+ RLR+IR +RG+RH GL VRGQ VSKK+ Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSKKK 147
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRFU (30S ribosomal protein S13P OS=Pyrococcus furiosus GN=rps13p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24 Identity = 54/127 (42.52%), Postives = 87/127 (68.50%), Query Frame = -3 Query: 260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640 +F+HI+RV ++DG +++ +ALT+IKGIG A +VC+ A +D +AG L+ ++ + ++A+P IP W +NR KDY+ G+ +++ LDM +R+D+ RLR+IR +RG+RH GL VRGQ Sbjct: 3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRAB (30S ribosomal protein S13P OS=Pyrococcus abyssi GN=rps13p PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24 Identity = 53/127 (41.73%), Postives = 86/127 (67.72%), Query Frame = -3 Query: 260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640 DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ + ++ +P IP W +NR KDY+ G+ +++ LDM +R+D+ RLR+IR +RG+RH GL VRGQ Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQ 129
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METKA (30S ribosomal protein S13P OS=Methanopyrus kandleri GN=rps13p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24 Identity = 53/133 (39.85%), Postives = 89/133 (66.92%), Query Frame = -3 Query: 260 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA--NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 652 +A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A +C++ +D K+ GELS E++ + + + + IP W NRQKDY+ G+ +V L+M ++ D++RL+KIR +RG+RH GL VRGQ Sbjct: 1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEEIERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIRAYRGIRHELGLPVRGQ 133
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_HYPBU (30S ribosomal protein S13P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps13p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24 Identity = 53/132 (40.15%), Postives = 86/132 (65.15%), Query Frame = -3 Query: 260 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 655 +++ + +++I+R+L T++ G K+ + L +KGIG LA +C+ +D NKR G L+ AE++ + +ANP IP W LNR+KDY+ GK +V L ++ D+ER ++IR+ RG+RH GL+VRGQ Sbjct: 1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDAEIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIRSWRGIRHALGLKVRGQ 132
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PICTO (30S ribosomal protein S13P OS=Picrophilus torridus GN=rps13p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23 Identity = 50/129 (38.76%), Postives = 85/129 (65.89%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 NE+FQ+I+R+ N +++G++ + AL +KGIG RL+ + KK D+D ++R GEL +++ L + IP W N ++D GK +VSN LD+++ DD+ ++K+R+++G+RH GL+VRGQ Sbjct: 8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIEELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMRSYKGIRHERGLKVRGQ 136
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRKO (30S ribosomal protein S13P OS=Pyrococcus kodakaraensis GN=rps13p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23 Identity = 54/128 (42.19%), Postives = 84/128 (65.62%), Query Frame = -3 Query: 260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643 E+F+HI+RV ++DG +++ +ALT IKGIG A +V + A +D +AG L+ ++ + ++A+P IP W +NR KDY+ GK +++ L M R+D+ RLR+IR +RG+RH GL VRGQ Sbjct: 3 ENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVKKIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIRAYRGIRHELGLPVRGQ 130
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METJA (30S ribosomal protein S13P OS=Methanocaldococcus jannaschii GN=rps13p PE=3 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23 Identity = 51/129 (39.53%), Postives = 84/129 (65.12%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 N +F++++RV T++DG +K++ AL I G+G +A + + A +D NK AG L+ E+ + V+A+P +F IP W NR+KDY G+ V+ + L + ++D+ RL++IR +RG+RH GL RGQ Sbjct: 3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVKKIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIRCYRGIRHELGLPCRGQ 131 The following BLAST results are available for this feature:
BLAST of CX296510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296510 ID=CX296510; Name=CX296510; organism=Citrus clementina; type=EST; length=684bpback to top |