CX296510
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23 Identity = 52/145 (35.86%), Postives = 85/145 (58.62%), Query Frame = -3 Query: 206 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 640 ++++I+R+ T++DG K ++ L IKG+G LA +C++ +D R G L+ E+ + +++NP + IP W LNR+KDY GK ++ L ++ D+ER +KI++ RG+RH GL+VRGQ V KKR Sbjct: 6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHALGLKVRGQRTRTTGRLGLTVGVRKKR 150
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22 Identity = 52/127 (40.94%), Postives = 80/127 (62.99%), Query Frame = -3 Query: 260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640 + Q+I+R+ NTN+DG ++I FALT I+GIG R+A +CK+ +D+ KRAGE+ E+ + + +P IP+ ++N Q+D DG S ++ LD LR +ER +K + R R GL+VRGQ Sbjct: 9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQ 135
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22 Identity = 53/127 (41.73%), Postives = 82/127 (64.57%), Query Frame = -3 Query: 260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640 + +HI+R+ NT++DGK+++ ALT IKG+GRRLA + KA VD G+L +++ L V+ + R IP W +NR+KD G V+ + LR+DL+ ++K R+++G+RH GLRVRGQ Sbjct: 11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRHELGLRVRGQ 136
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22 Identity = 47/129 (36.43%), Postives = 88/129 (68.22%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 N+DFQ+I+R+ N +++G++ I AL+ +KGIG RL + ++ ++ K+ GEL E++ L V N +++ +PDW LN +++ GK +V+ LD+++++D+ ++KIR+++G+RH G +VRGQ Sbjct: 25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22 Identity = 45/129 (34.88%), Postives = 90/129 (69.77%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 N+DFQ+I+R+ N +++G++ + AL+ +KGIG RL ++ ++ D+ ++K+ GEL +L+ L V +++ +P+W LN +++ GK +VS L++++++D+ ++KIR+++G+RH G +VRGQ Sbjct: 25 NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21 Identity = 50/129 (38.76%), Postives = 82/129 (63.57%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 ++ F++++R+ +VDG K+ +AL +KGIG A + +K +D N R GELS AE+ + V+++ +P W NR+KDY+ G +V++ L +R+D+ER +K R+ RG+RH GL+VRGQ Sbjct: 2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQ 130
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21 Identity = 51/131 (38.93%), Postives = 85/131 (64.89%), Query Frame = -3 Query: 260 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 652 ++ + F++I+R+ +VDG K+ +AL IKGIG A I+ +K ++D +KR GE+S ++ + ++ N + P+W NRQKDY+ G +V++ L +R+D+ER R+ R+ RG+RH GL+VRGQ Sbjct: 1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLGLKVRGQ 131
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21 Identity = 48/129 (37.21%), Postives = 78/129 (60.47%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD + G L E+ L + +P W LNRQKD G+ ++ + + R+D+ L+K+R +RGLRH GL+VRGQ Sbjct: 17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21 Identity = 48/128 (37.50%), Postives = 83/128 (64.84%), Query Frame = -3 Query: 260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643 ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD + G L ++D L V+ N + +P W LNR++D G+ + L M +++D+ ++KIR+++G+RH G +VRGQ Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRGQ 193
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21 Identity = 49/129 (37.98%), Postives = 80/129 (62.02%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 +ED Q+ +R+ T++DG + + ALT + GIGRR+A I+ +KA+VD G L ++D+++ V ++P+W N QKD+ G+ + + N L M R D+ R++KI +RG+RH G +VRGQ Sbjct: 12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQ 139 The following BLAST results are available for this feature:
BLAST of CX296510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296510 ID=CX296510; Name=CX296510; organism=Citrus clementina; type=EST; length=684bpback to top |