CX296510

Overview
NameCX296510
Unique NameCX296510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_STAMF (30S ribosomal protein S13P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 52/145 (35.86%), Postives = 85/145 (58.62%), Query Frame = -3
Query:  206 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 640
            ++++I+R+  T++DG  K ++ L  IKG+G  LA  +C++  +D   R G L+  E+  +  +++NP  + IP W LNR+KDY  GK   ++   L   ++ D+ER +KI++ RG+RH  GL+VRGQ             V KKR
Sbjct:    6 NYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDEEIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIKSWRGIRHALGLKVRGQRTRTTGRLGLTVGVRKKR 150          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS18_ENCCU (40S ribosomal protein S18 OS=Encephalitozoon cuniculi GN=RPS18 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 52/127 (40.94%), Postives = 80/127 (62.99%), Query Frame = -3
Query:  260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640
            + Q+I+R+ NTN+DG ++I FALT I+GIG R+A  +CK+  +D+ KRAGE+   E+  +   + +P    IP+ ++N Q+D  DG  S ++   LD  LR  +ER +K +  R  R   GL+VRGQ
Sbjct:    9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRISDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKKNKRIRAYRLDVGLKVRGQ 135          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METTP (30S ribosomal protein S13P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps13p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 53/127 (41.73%), Postives = 82/127 (64.57%), Query Frame = -3
Query:  260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640
            + +HI+R+ NT++DGK+++  ALT IKG+GRRLA +   KA VD     G+L   +++ L  V+ + R   IP W +NR+KD   G    V+   +   LR+DL+ ++K R+++G+RH  GLRVRGQ
Sbjct:   11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEALKNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTRSYKGIRHELGLRVRGQ 136          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_THEVO (30S ribosomal protein S13P OS=Thermoplasma volcanium GN=rps13p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 47/129 (36.43%), Postives = 88/129 (68.22%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            N+DFQ+I+R+ N +++G++ I  AL+ +KGIG RL   + ++ ++   K+ GEL   E++ L   V N +++ +PDW LN +++   GK   +V+  LD+++++D+  ++KIR+++G+RH  G +VRGQ
Sbjct:   25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIEKLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_THEAC (30S ribosomal protein S13P OS=Thermoplasma acidophilum GN=rps13p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 45/129 (34.88%), Postives = 90/129 (69.77%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            N+DFQ+I+R+ N +++G++ +  AL+ +KGIG RL  ++ ++ D+ ++K+ GEL   +L+ L   V   +++ +P+W LN +++   GK   +VS  L++++++D+  ++KIR+++G+RH  G +VRGQ
Sbjct:   25 NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLEKLREYV-EAKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIRSYKGIRHEKGKKVRGQ 152          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_SULSO (30S ribosomal protein S13P OS=Sulfolobus solfataricus GN=rps13p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 50/129 (38.76%), Postives = 82/129 (63.57%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            ++ F++++R+   +VDG  K+ +AL  +KGIG   A  + +K  +D N R GELS AE+  +  V+++     +P W  NR+KDY+ G    +V++ L   +R+D+ER +K R+ RG+RH  GL+VRGQ
Sbjct:    2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQ 130          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_SULAC (30S ribosomal protein S13P OS=Sulfolobus acidocaldarius GN=rps13p PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 51/131 (38.93%), Postives = 85/131 (64.89%), Query Frame = -3
Query:  260 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 652
            ++ + F++I+R+   +VDG  K+ +AL  IKGIG   A I+ +K ++D +KR GE+S  ++  +  ++ N    + P+W  NRQKDY+ G    +V++ L   +R+D+ER R+ R+ RG+RH  GL+VRGQ
Sbjct:    1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLGLKVRGQ 131          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METAC (30S ribosomal protein S13P OS=Methanosarcina acetivorans GN=rps13p PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21
Identity = 48/129 (37.21%), Postives = 78/129 (60.47%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD +   G L   E+  L   +       +P W LNRQKD   G+   ++   + +  R+D+  L+K+R +RGLRH  GL+VRGQ
Sbjct:   17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVAKLDTAIGKFEDI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_UNCMA (30S ribosomal protein S13P OS=Uncultured methanogenic archaeon RC-I GN=rps13p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 48/128 (37.50%), Postives = 83/128 (64.84%), Query Frame = -3
Query:  260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643
            ++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD +   G L   ++D L  V+ N  +  +P W LNR++D   G+   +    L M +++D+  ++KIR+++G+RH  G +VRGQ
Sbjct:   67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDKLRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIRSYKGIRHERGQKVRGQ 193          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_NATPD (30S ribosomal protein S13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps13p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 49/129 (37.98%), Postives = 80/129 (62.02%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            +ED Q+ +R+  T++DG + +  ALT + GIGRR+A I+ +KA+VD     G L   ++D+++  V      ++P+W  N QKD+  G+ +  + N L M  R D+ R++KI  +RG+RH  G +VRGQ
Sbjct:   12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKIDDVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKIDAYRGVRHKRGQKVRGQ 139          
The following BLAST results are available for this feature:
BLAST of CX296510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_STAMF6.997e-2335.8630S ribosomal protein S13P OS=Staphylothermus mari... [more]
RS18_ENCCU1.559e-2240.9440S ribosomal protein S18 OS=Encephalitozoon cunic... [more]
RS13_METTP3.473e-2241.7330S ribosomal protein S13P OS=Methanosaeta thermop... [more]
RS13_THEVO5.923e-2236.4330S ribosomal protein S13P OS=Thermoplasma volcani... [more]
RS13_THEAC5.923e-2234.8830S ribosomal protein S13P OS=Thermoplasma acidoph... [more]
RS13_SULSO1.010e-2138.7630S ribosomal protein S13P OS=Sulfolobus solfatari... [more]
RS13_SULAC1.010e-2138.9330S ribosomal protein S13P OS=Sulfolobus acidocald... [more]
RS13_METAC2.251e-2137.2130S ribosomal protein S13P OS=Methanosarcina aceti... [more]
RS13_UNCMA2.940e-2137.5030S ribosomal protein S13P OS=Uncultured methanoge... [more]
RS13_NATPD5.014e-2137.9830S ribosomal protein S13P OS=Natronomonas pharaon... [more]

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Properties
Property NameValue
Genbank descriptionC05142B04SK FerrChloL1 Citrus clementina cDNA clone C05142B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296510 ID=CX296510; Name=CX296510; organism=Citrus clementina; type=EST; length=684bp
AAATATATGTTGCAAAACATCTGAATAAAAATATTACCATAGAGAAAATA
ATAGATAAAAGACAGACAGTTCAAATGCTTAAAACCCATCCAAAGAAAAG
AAAATAAATCTAATATTGTCTGATGCAAATGTTCAGCAATAGCAAGTCCA
AACTCTTCCTGAACATGTGTATAGATTGTTCAAAACATTGATAAAGGACA
GCTCAACGCTTCTTGGAGACACCAACAGTCTTTCCACGACGGCCGGTGGT
CTTGGTGTGTTGTCCACGGACACGAAGACCCCAGTAGTGCCTGAGACCAC
GGTGGTTCCTGATCTTCCTCAGACGCTCCAAGTCATCTCTCAACTTCATG
TCCAGTGCATTGGATACAACCTGAGAATACTTTCCATCCTTGTAATCCTT
CTGTCTGTTCAAGAACCAATCAGGGATTTTAAACTGTCGGGGATTTGCAA
CAACGACCATGAGATTGTCAAGTTCAGCAGCAGATAGTTCACCGGCCCTC
TTGTTCATGTCAACATCAGCTTTCTTGCAAACGATGTTAGCCAGTCGCCT
TCCAATACCCTTAATTGAAGTAAGAGCAAACATAATCTTCTGCTTCCCGT
CGACGTTAGTGTTCAGCACACGCAAAATGTGCTGAAAATCTTCGTTCGCC
ACCAGAGACATTTTCGATTGTGAGGATTGATGAT
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