CX296510
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METMA (30S ribosomal protein S13P OS=Methanosarcina mazei GN=rps13p PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21 Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ L + + +P W LNRQKD G+ ++ + + R+D+ L+K+R +RGLRH GL+VRGQ Sbjct: 17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_SULTO (30S ribosomal protein S13P OS=Sulfolobus tokodaii GN=rps13p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21 Identity = 47/128 (36.72%), Postives = 82/128 (64.06%), Query Frame = -3 Query: 260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643 + F++I+R+ +VDG K+ +AL +KGIG A + K +D ++R GELS ++ + + + + ++P+W NR+KDY+ G +V++ L +R+D+ER +KI++ RG+RH GL+VRGQ Sbjct: 5 QQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDEDIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIKSWRGVRHSLGLKVRGQ 132
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METBF (30S ribosomal protein S13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps13p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21 Identity = 50/129 (38.76%), Postives = 78/129 (60.47%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+ L + N +P W LNRQKD G+ ++ + + R+D+ L+K+R +RGLRH GL+VRGQ Sbjct: 17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVAKLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQ 144
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_AERPE (30S ribosomal protein S13P OS=Aeropyrum pernix GN=rps13p PE=3 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19 Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = -3 Query: 206 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 655 + F++I+R+ ++DG K+ + L SIKGIG A V + +D K+ G L+ E+ L V+ + Q +P W NR+KDY+ GK ++ + L R D+ER KI + RG+RH +GL+VRGQ V KKR Sbjct: 1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEEEIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKIGSWRGIRHKYGLKVRGQRTRTTGRLGMTIGVRKKR 150
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METBU (30S ribosomal protein S13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps13p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19 Identity = 47/131 (35.88%), Postives = 82/131 (62.60%), Query Frame = -3 Query: 260 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 652 +A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++ +D N G LS ++ L + + + ++P W LNRQ D G+ ++ + + L++DL L+K R +RGLRH GL+VRGQ Sbjct: 1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDEDIKKLDSTI-DKFEEQLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSRAYRGLRHERGLKVRGQ 130
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METHJ (30S ribosomal protein S13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps13p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19 Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 +++ + +RV NT++DG + ++ +LT IKG+GR A + + A V+ N G+L A +D + VV+N +IP W NR KD G ++ + M + DD+ L+KIR +RG+RH G +VRGQ Sbjct: 5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVDRIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIRAYRGIRHETGQKVRGQ 132
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_ARCFU (30S ribosomal protein S13P OS=Archaeoglobus fulgidus GN=rps13p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19 Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = -3 Query: 260 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 637 F+HI+R+ +T++DG + +MFALT IKGIG R A + + VD + GEL ++ + V + +P W LNR+KD G+ ++S +D D+ERL K++ +RG+RH G +VRGQ Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVKKFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMKAYRGVRHARGKKVRGQ 127
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_HALMA (30S ribosomal protein S13P OS=Haloarcula marismortui GN=rps13p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18 Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = -3 Query: 260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643 ED ++ +R+ T++DG + + ALT + GIG R A I+ +KADVD G+L ++ ++ V N +P+W N QKDY G+ + N L + R D+ R++ I ++RG+RH G +VRGQ Sbjct: 18 EDIRYFVRIGQTDLDGTKSVERALTELNGIGHRAARIIAQKADVDRRAVFGKLDDDVIERVVERVENFAD-DVPEWMTNHQKDYFTGETTHETGNDLQLTRRQDINRMKMIDSYRGVRHKRGQKVRGQ 144
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_THEPD (30S ribosomal protein S13P OS=Thermofilum pendens (strain Hrk 5) GN=rps13p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18 Identity = 45/127 (35.43%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640 +F++I+RV ++ G + +++AL IKGIG A V KK +D + G LS E++ L + + +P W LNR+KD G ++++ L + +R+D+E ++KI++++G+RH GL+VRGQ Sbjct: 4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKLSAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIKSYKGVRHMLGLKVRGQ 130
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METMJ (30S ribosomal protein S13P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps13p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18 Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = -3 Query: 260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643 E+ ++ +RV NT++DG + + ALT IKGIG + + A VD + G+L + + V + ++PDW +NRQKD G+ ++ L M DD+ R+RK+R++RG+RH G +VRGQ Sbjct: 4 EEIKYFVRVRNTDLDGTKAVHIALTGIKGIGPHTSRTITALAAVDPHAILGKLDDESVGRIANAVDTYTE-QVPDWMVNRQKDVYTGEVRHLLGTDLTMMNDDDVNRMRKMRSYRGIRHETGQKVRGQ 130 The following BLAST results are available for this feature:
BLAST of CX296510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296510 ID=CX296510; Name=CX296510; organism=Citrus clementina; type=EST; length=684bpback to top |