CX296510
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17 Identity = 43/129 (33.33%), Postives = 82/129 (63.57%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 +++ + I+R+ +T++DG +++ ++LT I+GIG A +C+K +D + G LS +++ L V N + P WFLNR+KD + GK ++ L + + D++ ++K+++ +G+RH GL+VRGQ Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METMP (30S ribosomal protein S13P OS=Methanococcus maripaludis GN=rps13p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17 Identity = 41/127 (32.28%), Postives = 76/127 (59.84%), Query Frame = -3 Query: 260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640 +F+H +R+ T+++GK + +AL +KGIGR +A V + ++D ++AG L+ ++ + V+ +P IP W NR+KD G ++ L + +++D+ ++KIR ++G+RH L RGQ Sbjct: 5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQ 131
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_CENSY (30S ribosomal protein S13P OS=Cenarchaeum symbiosum GN=rps13p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17 Identity = 41/138 (29.71%), Postives = 81/138 (58.70%), Query Frame = -3 Query: 260 SQSKMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 673 + K ++ ++++HI+R+L ++ G++K + L I+GIG A + +D N G L+ ++ ++ ++ +P P WFLNR+KD + G+ + ++ ++ +R+D+ER R + +G RH +GL+VRGQ Sbjct: 39 ASGKRPRLSAQEYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASIEKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMFGLKVRGQ 176
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METLZ (30S ribosomal protein S13P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps13p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16 Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = -3 Query: 206 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV-ANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 655 +V + ++ +R++NT++DG Q + ALT IKGIG A I+ ++A VD G L ++ + V A P +P W +NR D G+ + + L + DD+ ++K+R +RG+RH GL+VRGQ VSK+R Sbjct: 1 MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDVAAIEEQVKAYPAS--VPKWMVNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGIRHENGLKVRGQRTKATGRFGKIVGVSKRR 149
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRCJ (30S ribosomal protein S13P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps13p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16 Identity = 41/128 (32.03%), Postives = 79/128 (61.72%), Query Frame = -3 Query: 260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643 ++ + I+R+ +T++DG + + +AL I+GIG A +C+K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ ++K+++ +G+RH GL+VRGQ Sbjct: 3 QEIRAIVRIGDTDLDGNKTVAYALAKIRGIGIATAYAICRKLGIDPHATLGLLPEDQINKLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVRGQ 129
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_HALWD (30S ribosomal protein S13P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps13p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16 Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 ++D Q+ +R+ T++DG + + +LT +KGIG+R A I+ A VD + G L E+D++ V N IP W NR++D+ G L+ K R D+ R++ I +++G+RH G +VRGQ Sbjct: 15 DDDLQYFVRIGTTDLDGTKAVERSLTDMKGIGKRTARIITDVASVDRHATFGLLEEDEIDSITDAVEN-LDDHIPGWMTNRREDFFSGDTDHKTGADLEEKRRHDVNRMKMIDSYKGVRHKRGQKVRGQ 142
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRAE (30S ribosomal protein S13P OS=Pyrobaculum aerophilum GN=rps13p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16 Identity = 41/129 (31.78%), Postives = 80/129 (62.02%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 +++ + I+R+ +T++DG +++ +AL I+GIG A +C K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ ++K+++ +G+RH GL+VRGQ Sbjct: 2 SQEIRAIVRIGDTDLDGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAILGALPEDQINKLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRAR (30S ribosomal protein S13P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps13p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15 Identity = 41/129 (31.78%), Postives = 80/129 (62.02%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 +++ + I+RV +T+++G +++ +AL I+GIG A +C K +D + G L +++ L V N + P WFLNR+KD + G+ ++ + L + + D++ ++K+++ +G+RH GL+VRGQ Sbjct: 2 SQELRAIVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAVRNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVRGQ 129
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_HALSA (30S ribosomal protein S13P OS=Halobacterium salinarium GN=rps13p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15 Identity = 42/129 (32.56%), Postives = 73/129 (56.59%), Query Frame = -3 Query: 260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646 +ED Q+ +R+ T++DG + + AL + G+GRR+A IV +A VD G L ++++ V + + P W NRQ D+ G+ + +++ D+ R+R IR+++G+RH G +VRGQ Sbjct: 10 DEDIQYFVRIGQTDLDGTKTVERALAELGGVGRRVARIVADEAGVDRTATMGGLEDDAIESVTDAVDSFTEHA-PAWLANRQNDFYTGENQHITGTDVELTRDQDINRMRMIRSYKGIRHERGQKVRGQ 137
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_NANEQ (30S ribosomal protein S13P OS=Nanoarchaeum equitans GN=rps13p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14 Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = -3 Query: 260 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 628 I+ + + ++DG + I L + G+ A+ VC +D ++ G LS EL+ L + NP ++ IP W NR++D + GK +V N + + D++R +I + RG RH GL VRGQ Sbjct: 13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDALRNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPVRGQ 135 The following BLAST results are available for this feature:
BLAST of CX296510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296510 ID=CX296510; Name=CX296510; organism=Citrus clementina; type=EST; length=684bpback to top |