CX296510

Overview
NameCX296510
Unique NameCX296510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig309 contig Ccv1_Contig309:81..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRIL (30S ribosomal protein S13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps13p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 43/129 (33.33%), Postives = 82/129 (63.57%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            +++ + I+R+ +T++DG +++ ++LT I+GIG   A  +C+K  +D +   G LS  +++ L   V N  +   P WFLNR+KD + GK   ++   L +  + D++ ++K+++ +G+RH  GL+VRGQ
Sbjct:    2 SQEIRAIVRIGDTDLDGNKQVAYSLTKIRGIGIATAYAICRKLGIDPHAILGALSEEQINKLDWAVRNLHELA-PAWFLNRRKDPETGKDLHLIGAELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METMP (30S ribosomal protein S13P OS=Methanococcus maripaludis GN=rps13p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/127 (32.28%), Postives = 76/127 (59.84%), Query Frame = -3
Query:  260 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 640
            +F+H +R+  T+++GK  + +AL  +KGIGR +A  V +  ++D  ++AG L+  ++  +  V+ +P    IP W  NR+KD   G    ++   L + +++D+  ++KIR ++G+RH   L  RGQ
Sbjct:    5 EFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQ 131          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_CENSY (30S ribosomal protein S13P OS=Cenarchaeum symbiosum GN=rps13p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 41/138 (29.71%), Postives = 81/138 (58.70%), Query Frame = -3
Query:  260 SQSKMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 673
            +  K   ++ ++++HI+R+L  ++ G++K +  L  I+GIG   A  +     +D N   G L+  ++ ++  ++ +P     P WFLNR+KD + G+   + ++ ++  +R+D+ER R   + +G RH +GL+VRGQ
Sbjct:   39 ASGKRPRLSAQEYKHIVRILGNDLPGEKKAVVGLRQIRGIGYGFATAILDVLKIDNNSNIGYLTDEQVASIEKLLQDPAGAGFPTWFLNRRKDLETGEDRHIFTSDIEFTVRNDVERERVSGSWKGYRHMFGLKVRGQ 176          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_METLZ (30S ribosomal protein S13P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps13p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = -3
Query:  206 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV-ANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 655
            +V   + ++ +R++NT++DG Q +  ALT IKGIG   A I+ ++A VD     G L   ++  +   V A P    +P W +NR  D   G+   +  + L +   DD+  ++K+R +RG+RH  GL+VRGQ             VSK+R
Sbjct:    1 MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDVAAIEEQVKAYPAS--VPKWMVNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGIRHENGLKVRGQRTKATGRFGKIVGVSKRR 149          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRCJ (30S ribosomal protein S13P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps13p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 41/128 (32.03%), Postives = 79/128 (61.72%), Query Frame = -3
Query:  260 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 643
            ++ + I+R+ +T++DG + + +AL  I+GIG   A  +C+K  +D +   G L   +++ L   V N  +   P WFLNR+KD + G+   ++ + L +  + D++ ++K+++ +G+RH  GL+VRGQ
Sbjct:    3 QEIRAIVRIGDTDLDGNKTVAYALAKIRGIGIATAYAICRKLGIDPHATLGLLPEDQINKLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVRGQ 129          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_HALWD (30S ribosomal protein S13P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps13p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            ++D Q+ +R+  T++DG + +  +LT +KGIG+R A I+   A VD +   G L   E+D++   V N     IP W  NR++D+  G         L+ K R D+ R++ I +++G+RH  G +VRGQ
Sbjct:   15 DDDLQYFVRIGTTDLDGTKAVERSLTDMKGIGKRTARIITDVASVDRHATFGLLEEDEIDSITDAVEN-LDDHIPGWMTNRREDFFSGDTDHKTGADLEEKRRHDVNRMKMIDSYKGVRHKRGQKVRGQ 142          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRAE (30S ribosomal protein S13P OS=Pyrobaculum aerophilum GN=rps13p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 41/129 (31.78%), Postives = 80/129 (62.02%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            +++ + I+R+ +T++DG +++ +AL  I+GIG   A  +C K  +D +   G L   +++ L   V N  +   P WFLNR+KD + G+   ++ + L +  + D++ ++K+++ +G+RH  GL+VRGQ
Sbjct:    2 SQEIRAIVRIGDTDLDGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAILGALPEDQINKLDWAVRNLHELA-PAWFLNRRKDPETGRDLHLIGSELVLAAKRDVDLMKKLKSWKGVRHSLGLKVRGQ 129          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_PYRAR (30S ribosomal protein S13P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps13p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 41/129 (31.78%), Postives = 80/129 (62.02%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            +++ + I+RV +T+++G +++ +AL  I+GIG   A  +C K  +D +   G L   +++ L   V N  +   P WFLNR+KD + G+   ++ + L +  + D++ ++K+++ +G+RH  GL+VRGQ
Sbjct:    2 SQELRAIVRVGDTDLEGNKQVAYALAKIRGIGIASAYAICWKLGIDPHAVLGALPEEQINKLDWAVRNLHEVA-PAWFLNRRKDPETGRDMHLIGSELVLAAKRDVDLMKKLKSWKGIRHSLGLKVRGQ 129          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_HALSA (30S ribosomal protein S13P OS=Halobacterium salinarium GN=rps13p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 42/129 (32.56%), Postives = 73/129 (56.59%), Query Frame = -3
Query:  260 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 646
            +ED Q+ +R+  T++DG + +  AL  + G+GRR+A IV  +A VD     G L    ++++   V +  +   P W  NRQ D+  G+   +    +++    D+ R+R IR+++G+RH  G +VRGQ
Sbjct:   10 DEDIQYFVRIGQTDLDGTKTVERALAELGGVGRRVARIVADEAGVDRTATMGGLEDDAIESVTDAVDSFTEHA-PAWLANRQNDFYTGENQHITGTDVELTRDQDINRMRMIRSYKGIRHERGQKVRGQ 137          
BLAST of CX296510 vs. ExPASy Swiss-Prot
Match: RS13_NANEQ (30S ribosomal protein S13P OS=Nanoarchaeum equitans GN=rps13p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = -3
Query:  260 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLRKIRNHRGLRHYWGLRVRGQ 628
            I+ + + ++DG + I   L  + G+    A+ VC    +D  ++ G LS  EL+ L   + NP ++ IP W  NR++D + GK   +V N   + +  D++R  +I + RG RH  GL VRGQ
Sbjct:   13 IVHIADVDLDGHKPIYVELRKVVGVNWMFAHAVCAALGIDKWRKIGSLSDEELEKLEDALRNPWKYGIPSWLYNRRRDPETGKDLHLVGNDYKITMEFDIKREMQINSWRGYRHREGLPVRGQ 135          
The following BLAST results are available for this feature:
BLAST of CX296510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS13_PYRIL1.972e-1733.3330S ribosomal protein S13P OS=Pyrobaculum islandic... [more]
RS13_METMP4.393e-1732.2830S ribosomal protein S13P OS=Methanococcus maripa... [more]
RS13_CENSY4.393e-1729.7130S ribosomal protein S13P OS=Cenarchaeum symbiosu... [more]
RS13_METLZ1.278e-1633.1130S ribosomal protein S13P OS=Methanocorpusculum l... [more]
RS13_PYRCJ2.847e-1632.0330S ribosomal protein S13P OS=Pyrobaculum calidifo... [more]
RS13_HALWD3.719e-1634.8830S ribosomal protein S13P OS=Haloquadratum walsby... [more]
RS13_PYRAE8.284e-1631.7830S ribosomal protein S13P OS=Pyrobaculum aerophil... [more]
RS13_PYRAR1.082e-1531.7830S ribosomal protein S13P OS=Pyrobaculum arsenati... [more]
RS13_HALSA1.413e-1532.5630S ribosomal protein S13P OS=Halobacterium salina... [more]
RS13_NANEQ2.041e-1433.3330S ribosomal protein S13P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC05142B04SK FerrChloL1 Citrus clementina cDNA clone C05142B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296510 ID=CX296510; Name=CX296510; organism=Citrus clementina; type=EST; length=684bp
AAATATATGTTGCAAAACATCTGAATAAAAATATTACCATAGAGAAAATA
ATAGATAAAAGACAGACAGTTCAAATGCTTAAAACCCATCCAAAGAAAAG
AAAATAAATCTAATATTGTCTGATGCAAATGTTCAGCAATAGCAAGTCCA
AACTCTTCCTGAACATGTGTATAGATTGTTCAAAACATTGATAAAGGACA
GCTCAACGCTTCTTGGAGACACCAACAGTCTTTCCACGACGGCCGGTGGT
CTTGGTGTGTTGTCCACGGACACGAAGACCCCAGTAGTGCCTGAGACCAC
GGTGGTTCCTGATCTTCCTCAGACGCTCCAAGTCATCTCTCAACTTCATG
TCCAGTGCATTGGATACAACCTGAGAATACTTTCCATCCTTGTAATCCTT
CTGTCTGTTCAAGAACCAATCAGGGATTTTAAACTGTCGGGGATTTGCAA
CAACGACCATGAGATTGTCAAGTTCAGCAGCAGATAGTTCACCGGCCCTC
TTGTTCATGTCAACATCAGCTTTCTTGCAAACGATGTTAGCCAGTCGCCT
TCCAATACCCTTAATTGAAGTAAGAGCAAACATAATCTTCTGCTTCCCGT
CGACGTTAGTGTTCAGCACACGCAAAATGTGCTGAAAATCTTCGTTCGCC
ACCAGAGACATTTTCGATTGTGAGGATTGATGAT
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