CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296514_ssr404 microsatellite CX296514_ssr404:404..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.259e-22
Identity = 50/74 (67.57%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGGTLDSKVEVD 660
            K YRGVRRRPWG+YAAEIRD  R G+RVWLGTF+TA EAA AYD +AFR+RG+KA+LNFP E+   +++ V VD
Sbjct:   57 KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEI---VNASVSVD 127          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 44/64 (68.75%), Postives = 57/64 (89.06%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVG 630
            +HYRGVR+RPWG++AAEIRDP + G+RVWLGT++TA EAA AYD +A+R+RGSKA+LNFP  +G
Sbjct:   97 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 160          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 44/64 (68.75%), Postives = 57/64 (89.06%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVG 630
            +HYRGVR+RPWG++AAEIRDP + G+RVWLGT++TA EAA AYD +A+R+RGSKA+LNFP  +G
Sbjct:  101 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 164          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.759e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEV 627
            EEK YRGVR+RPWG++AAEIRD  RKG RVWLGTFDTA  AA AYD +AF L+GS A+LNFP +V
Sbjct:   78 EEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADV 142          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 44/64 (68.75%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVG 630
            +HYRGVRRRPWG++AAEIRDP + G+RVWLGT++T  EAA AYD +A+R+RGSKA LNFP  +G
Sbjct:  103 RHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIG 166          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGGTLD 642
            ++  +RGVRRRPWG++AAEIRDP+R G+R+WLGTF+TA EAA+AYD +AF LRG  AILNFP E    +D
Sbjct:   16 KQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNEYYPRMD 85          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL 621
            ++E HYRGVR+RPWGRYAAEIRDP +K SRVWLGTFDTA EAAKAYD +A   RG KA  NFPL
Sbjct:   22 VKEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPL 84          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.048e-20
Identity = 42/64 (65.62%), Postives = 56/64 (87.50%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVG 630
            +HYRGVR+RPWG++AAEIRDP + G+RVWLGT+++A EAA AY  +AFR+RG+KA+LNFP  +G
Sbjct:  105 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIG 168          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            E   YRGVRRRPWG+YAAEIRD  + G RVWLGTFDTA EAA+AYD +A+ +RG  AILNFP E
Sbjct:   11 EHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHE 74          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            ++E HYRGVR+RPWGRYAAEIRDP +K SRVWLGTFDTA EAAKAYD +A   RG KA  NFP
Sbjct:   22 VKEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PTI5_SOLLC3.259e-2267.57Pathogenesis-related genes transcriptional activat... [more]
ERF2_TOBAC5.560e-2268.75Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY5.560e-2268.75Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF94_ARATH2.759e-2172.31Ethylene-responsive transcription factor ERF094 OS... [more]
ERF1_TOBAC4.706e-2168.75Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF98_ARATH1.048e-2064.29Ethylene-responsive transcription factor ERF098 OS... [more]
ERF4_NICSY1.048e-2075.00Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF1_SOLLC1.048e-2065.63Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF96_ARATH3.051e-2070.31Ethylene-responsive transcription factor ERF096 OS... [more]
ERF4_TOBAC3.051e-2074.60Ethylene-responsive transcription factor 4 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
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