CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  442 HYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            ++RGVR R WG++ +EIR+P +K SR+WLGTF TA  AA+A+D +A  ++G  A LNFP
Sbjct:   44 NFRGVRMRQWGKWVSEIREPKKK-SRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFP 101          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILN 612
            YRGVR+R WG++ AEIR+P RK +R WLGTF TA +AA+AYD +A  L GS+A LN
Sbjct:   55 YRGVRQRSWGKWVAEIREP-RKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLN 109          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL 621
            +  K +RGVR+R WG + +EIR P  K  RVWLGTFDTA  AA+AYD +A  + G  A  NFP+
Sbjct:    2 VHSKKFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF70_ARATH (Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNR----KGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGGTLDSKV 651
            EK YRGVR+RPWG++ AEIR        +  R+WLGTF+TA EAA AYDN++ +L G  A  NF L      D  V
Sbjct:   76 EKKYRGVRQRPWGKWVAEIRCGRGACKGRRDRLWLGTFNTAEEAALAYDNASIKLIGPHAPTNFGLPAENQEDKTV 151          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            ++ ++RGVR R WG++ +EIR+P RK SR+WLGTF T   AA+A+D +A  ++G  A LNFP
Sbjct:   36 KQPNFRGVRMRQWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFP 96          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2E_ARATH (Dehydration-responsive element-binding protein 2E OS=Arabidopsis thaliana GN=DREB2E PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDP-------NRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGG 633
            +RGVR+R WG++ AEIR+P       + +  R+WLGTF TA EAA AYD +A  + G  A LNFP ++GG
Sbjct:   70 FRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRAASVMYGPYARLNFPEDLGG 139          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            K Y+GVR R WG +  EIR PN+K +R+WLG++ TA  AA+AYD +   L+G KA LNFP
Sbjct:   41 KKYKGVRMRSWGSWVTEIRAPNQK-TRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFP 99          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE1C_ORYSJ (Dehydration-responsive element-binding protein 1C OS=Oryza sativa subsp. japonica GN=DREB1C PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  433 EEKH--YRGVRRR-PWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            E +H  YRGVRRR P GR+  E+R+PN+K SR+WLGTF TA  AA+A+D +A  LRG  A LNF
Sbjct:   28 ETRHPVYRGVRRRGPAGRWVCEVREPNKK-SRIWLGTFATAEAAARAHDVAALALRGRGACLNF 90          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE1C_ORYSI (Dehydration-responsive element-binding protein 1C OS=Oryza sativa subsp. indica GN=DREB1C PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  433 EEKH--YRGVRRR-PWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            E +H  YRGVRRR P GR+  E+R+PN+K SR+WLGTF TA  AA+A+D +A  LRG  A LNF
Sbjct:   28 ETRHPVYRGVRRRGPAGRWVCEVREPNKK-SRIWLGTFATAEAAARAHDVAALALRGRGACLNF 90          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  433 EEKH--YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            E +H  YRGVRRR  G++  E+R+PN+K +R+WLGTF TA  AA+A+D +A  LRG  A LNF
Sbjct:   45 ETRHPIYRGVRRRNSGKWVCEVREPNKK-TRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 106          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF38_ARATH5.216e-1254.24Ethylene-responsive transcription factor ERF038 OS... [more]
ABI4_ARATH5.216e-1262.50Ethylene-responsive transcription factor ABI4 OS=A... [more]
SHN3_ARATH8.897e-1253.13Ethylene-responsive transcription factor SHINE 3 O... [more]
ERF70_ARATH8.897e-1250.00Ethylene-responsive transcription factor ERF070 OS... [more]
ERF39_ARATH8.897e-1251.61Ethylene-responsive transcription factor ERF039 OS... [more]
DRE2E_ARATH8.897e-1250.00Dehydration-responsive element-binding protein 2E ... [more]
ERF13_ARATH1.162e-1155.00Ethylene-responsive transcription factor ERF013 OS... [more]
DRE1C_ORYSJ1.982e-1159.38Dehydration-responsive element-binding protein 1C ... [more]
DRE1C_ORYSI1.982e-1159.38Dehydration-responsive element-binding protein 1C ... [more]
DRE1A_ARATH1.982e-1155.56Dehydration-responsive element-binding protein 1A ... [more]

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Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
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