CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296514_ssr404 microsatellite CX296514_ssr404:404..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.514e-19
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  328 SCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEV 627
            S  N++   DN  +V N                 +  +HYRGVR+RPWG++AAEIRDP +K +RVWLGTF+TA  AA AYD +A + +GSKA LNFP  V
Sbjct:   51 SHDNISSIDDNYPSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERV 149          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.813e-19
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            +  YRG+R+RPWG++AAEIRDP RKGSR WLGTFDTA EAA+AYD +A R+RG+KA +NFP E
Sbjct:  125 KNQYRGIRQRPWGKWAAEIRDP-RKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEE 186          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.813e-19
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGGTLDSKVE 654
            +   Y+G+RRRPWGR+AAEIRDP  KG RVWLGTF+TA EAA+AYD  A R+RG+KA LNFP E  G   +K +
Sbjct:   21 QSSRYKGIRRRPWGRWAAEIRDPI-KGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAK 93          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVG 630
            K YRGVR+RPWG++AAEIRDP+ K +RVWLGTF+TA  AA+AYD +A R RGSKA LNFP  VG
Sbjct:   59 KKYRGVRQRPWGKWAAEIRDPH-KATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVG 121          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGG 633
            +HYRGVR+RPWG++AAEIRDP +K +RVWLGTF+TA EAA AYD +A + +G+KA LNFP  V G
Sbjct:   37 RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQG 100          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEV 627
            +++ YRGVR+RPWG++AAEIRDP+R  +RVWLGTFDTA  AA+AYD +A R RG+KA LNFP +V
Sbjct:   73 KKRRYRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDV 136          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.729e-18
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            +E  YRGVR+RPWGRYAAEIRDP +K +RVWLGTFDTA EAA+AYD +A   RG+KA  NFP
Sbjct:   21 KEIRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            +  YRG+R+RPWG++AAEIRDP R+G+R+WLGTF TA EAA+AYD +A R+RGSKA +NFP E
Sbjct:  122 KNQYRGIRQRPWGKWAAEIRDP-REGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEE 183          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            ++E  +RGVR+RPWGR+AAEIRDP +K +RVWLGTFD+A EAA+AYD++A  LRG KA  NFP++
Sbjct:   23 VKEIRFRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPID 86          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            E HYRGVR+RPWGRYAAEIRDP +K +RVWLGTFDT  EAA AYD +A  LRG KA  NFP
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
EF114_ARATH7.514e-1948.00Ethylene-responsive transcription factor ERF114 OS... [more]
RAP22_ARATH9.813e-1969.84Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF73_ARATH9.813e-1962.16Ethylene-responsive transcription factor ERF073 OS... [more]
RAP26_ARATH1.282e-1870.31Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF113_ARATH1.282e-1866.15Ethylene-responsive transcription factor ERF113 OS... [more]
EF110_ARATH1.674e-1866.15Ethylene-responsive transcription factor ERF110 OS... [more]
ERF78_ARATH3.729e-1870.97Ethylene-responsive transcription factor 4 OS=Arab... [more]
RA212_ARATH4.870e-1866.67Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF82_ARATH1.085e-1764.62Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF81_ARATH1.417e-1773.77Ethylene-responsive transcription factor 12 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
back to top