CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR+RPWGRYAAEIRDP +K SRVWLGTFDT  EAA+AYD  A   RG+KA  NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKK-SRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRG+R+RPWG++AAEIRDP RKG RVWLGTF+TA EAA AYD +A ++RG KA LNFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.123e-17
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEV 627
            + YRGVR+RPWG++AAEIRDP  K +RVWLGTFD A  AA+AYD +A R RG+KA LNFP  V
Sbjct:  183 RRYRGVRQRPWGKWAAEIRDPF-KAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENV 244          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.385e-17
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRG+R+RPWG++AAEIRDP+ KG RVWLGTF TA EAA+AYD +A ++RG KA LNFP
Sbjct:   50 YRGIRQRPWGKWAAEIRDPS-KGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEVGGT 636
            +E  YRGVR+RPWGRYAAEIRDP +K +RVWLGTFDTA +AA+AYD +A   RG KA  NF + VG +
Sbjct:   27 KEIRYRGVRKRPWGRYAAEIRDPVKK-TRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSS 93          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.185e-17
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGS-KAILNFPLEVGGTLDSKVEVD 660
            + YRGVR+RPWG++AAEIRD  R G RVWLGTF TA EAA AYD +A R+RG+ KA  NF LE   T+   +E+D
Sbjct:  108 RKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE---TVIKAMEMD 179          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.185e-17
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            +  +RG+R+RPWG++AAEIRDP RKG RVWLGTF++A EAA+AYD  A R+RG KA +NFP
Sbjct:  117 KNQFRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.185e-17
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            + +RGVR+RPWG++AAEIRDP+R+  RVWLGTFDTA EAA  YDN+A +LRG  A LNFP
Sbjct:   85 RKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1
Query:  433 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL 621
            +E  +RGVR+RPWGR+AAEIRDP +K +RVWLGTFD+A +AA+AYD +A  LRG KA  NFPL
Sbjct:   24 KEIRFRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPL 85          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP-LEVGGTLDSKVEVD 660
            YRGVR+RPWG++AAEIRDP R  +RVWLGTF+TA +AA+AYD +A   RG +A LNFP ++   ++ S V  D
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAAD 207          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF76_ARATH1.417e-1774.14Ethylene-responsive transcription factor 11 OS=Ara... [more]
RAP23_ARATH3.157e-1772.41Ethylene-responsive transcription factor RAP2-3 OS... [more]
ABR1_ARATH4.123e-1766.67Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF71_ARATH5.385e-1770.69Ethylene-responsive transcription factor ERF071 OS... [more]
ERF79_ARATH7.033e-1764.71Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF91_ARATH9.185e-1760.00Ethylene-responsive transcription factor ERF091 OS... [more]
ERF1_ORYSJ9.185e-1765.57Ethylene-responsive transcription factor 1 OS=Oryz... [more]
CRF1_ARATH9.185e-1768.33Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF3_TOBAC1.567e-1666.67Ethylene-responsive transcription factor 3 OS=Nico... [more]
EF109_ARATH2.046e-1657.53Ethylene-responsive transcription factor ERF109 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
back to top