CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296514_ssr404 microsatellite CX296514_ssr404:404..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL 621
            K +RGVR+RPWGR+AAEIRDP R G RVWLGT+DT  EAA  YD +A +L+G  A+ NFP+
Sbjct:   96 KKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPV 155          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.776e-16
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLEV 627
            EK Y+G+R R WG++ AEIR+PN++ SR+WLG++ TAV AA+AYD + F LRG  A LNFP EV
Sbjct:   33 EKRYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEV 95          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.776e-16
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL 621
            K +RGVR+RPWG++AAEIRDP ++  R+WLGTF+TA EAA  YDN+A RLRG  A+ NF +
Sbjct:  123 KKFRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            I  K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD  AF+LRG  A LNFP
Sbjct:  138 IATKLYRGVRQRQWGKWVAEIRKP-RSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPLE 624
            +K YRGVR+RPWG++AAEIRDP ++  R+WLGTF TA EAA  YDN+A +LRG  A+ NF ++
Sbjct:  114 QKKYRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQ 175          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            ++ K YRGVR+RPWG++AAEIRDP+ + +R+WLGTF TA EAA AYD +A  L+G KA+ NF
Sbjct:  100 VKPKKYRGVRQRPWGKFAAEIRDPSSR-TRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            YRGVRRRPWGRYAAEIRDP  K  R WLGTFDTA +AA AYD++A   RG+KA  NF
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSK-ERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD  AF+LRG  A LNFP
Sbjct:  185 KLYRGVRQRHWGKWVAEIRKP-RNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD +AF+LRG  A LNFP
Sbjct:  141 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFP 199          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            EK +RGVR+RPWG++AAEIRDP ++  R+WLGT++TA EAA  YDN+A +LRG  A+ NF
Sbjct:  119 EKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PTI6_SOLLC2.672e-1663.93Pathogenesis-related genes transcriptional activat... [more]
RAP29_ARATH7.776e-1659.38Ethylene-responsive transcription factor RAP2-9 OS... [more]
CRF3_ARATH7.776e-1662.30Ethylene-responsive transcription factor CRF3 OS=A... [more]
ERF54_ARATH1.016e-1565.08Ethylene-responsive transcription factor ERF054 OS... [more]
CRF4_ARATH1.016e-1560.32Ethylene-responsive transcription factor CRF4 OS=A... [more]
CRF6_ARATH1.326e-1561.29Ethylene-responsive transcription factor CRF6 OS=A... [more]
ESR1_ARATH3.859e-1571.93Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF53_ARATH3.859e-1566.67Ethylene-responsive transcription factor ERF053 OS... [more]
ERF55_ARATH6.583e-1566.67Ethylene-responsive transcription factor ERF055 OS... [more]
CRF2_ARATH6.583e-1561.67Ethylene-responsive transcription factor CRF2 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
back to top