CX296517

Overview
NameCX296517
Unique NameCX296517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296517_ssr656 microsatellite CX296517_ssr656:656..665. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296517_ssr491 microsatellite CX296517_ssr491:491..502. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10350 contig Ccv1_Contig10350:39..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = -1
Query:  203 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 478
            S ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   41 STETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132          
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 90/103 (87.38%), Postives = 95/103 (92.23%), Query Frame = -1
Query:  203 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 511
            +GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   43 AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  203 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 478
            +IETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   47 NIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138          
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = -1
Query:  203 SGDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 511
            +G+       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   46 AGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148          
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  203 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 478
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  203 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 478
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  203 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 478
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140          
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = -1
Query:  206 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 478
            S+ETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   48 SVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138          
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  203 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 478
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
BLAST of CX296517 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  203 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 478
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
The following BLAST results are available for this feature:
BLAST of CX296517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B9_ARATH6.354e-4396.74Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B10_ARATH6.354e-4387.38Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B8_ARATH8.299e-4395.65Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650... [more]
H2B2_MEDTR8.299e-4387.38Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B11_ORYSJ8.299e-4395.65Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI8.299e-4395.65Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_SOLLC1.084e-4296.74Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B4_ARATH1.849e-4294.51Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470... [more]
H2B1_ORYSJ1.849e-4294.57Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_ORYSI1.849e-4294.57Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05142C11SK FerrChloL1 Citrus clementina cDNA clone C05142C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296517 ID=CX296517; Name=CX296517; organism=Citrus clementina; type=EST; length=697bp
GAGGCTAACATAATGAACATGCACATCACCTGGATCAGGTCCAAATTTCT
AGTACATCCAAACAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAA
ACATAAAAACGACTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTA
CACAAATCACATAACACCCGAATTCACCGACCGATGCAACAAACTTCCTT
CAAGAAGAAGTAAACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTG
CTTAGCCAGCTCACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCC
GAGATGTAATCGTCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCC
TGGGCAAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGATTCCCAT
GGCCTTGCTCGAGATTCCGATATCGGGATGTACCTGCTTCAGGACTTTGA
AGATGTAAATCTTGTACGTCTCGATGCTCTTCTTCGCGCGCTTCTTCTTC
TTGTCGCCAGAGGCGGCTTCTTTGGGAAGCTTCTTGCCGGCCTTCGGCTT
CTTCTCCGCCGGCGCCTTCTCGGCCACCGATGTCTTCTTCTCCTCCGCTG
GCTTCTTCTCAGCCGGCTTCTTCTCCGCCTTTGGTGCCATTAATTTCGGT
TTGGTAGAGAGAGAGAAAAGGCAGGCTTGTAGATATTTTCTTTTCCT
back to top