CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB1_CHLTE (Probable chaperone protein clpB 1 OS=Chlorobium tepidum GN=clpB1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.255e-21
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+A+S A++R+R G+ +  RPI SFIF GPTGVGK+ELA+ LA Y F  E+A+IR+DMSE+ME HTVS+L
Sbjct:  146 QDEAVRAVSDAVKRSRAGMGDEKRPIGSFIFLGPTGVGKTELARTLAEYLFDDEDALIRIDMSEYMEAHTVSRL 219          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.639e-21
Identity = 46/74 (62.16%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV+A+S A+RR+R GL++PNRPI SFIF GPTGVGK+EL KALA + F  E A++R+DMSE+ME+H+V++L
Sbjct:  575 QGDAVQAVSRAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETALMRIDMSEYMEKHSVARL 648          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.639e-21
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+ +S AIRR+R G+ + N+P  SF+F GPTGVGK+EL KALA + F SEE +IR+DMSEFME+H+VS+L
Sbjct:  576 QDEAVRLVSDAIRRSRAGIADENKPYGSFLFLGPTGVGKTELCKALAGFLFDSEEHLIRIDMSEFMEKHSVSRL 649          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: HSP78_SCHPO (Heat shock protein 78, mitochondrial OS=Schizosaccharomyces pombe GN=hsp78 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.140e-21
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEA+KAI+ A+R +R GL+N NRP+ASF+F GPTGVGK+ L KALA + F +++AMIR DMSEF E+HT+++L
Sbjct:  507 QDEALKAIADAVRLSRAGLQNTNRPLASFLFLGPTGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEKHTIARL 580          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_CAUCR (Chaperone protein clpB OS=Caulobacter crescentus GN=clpB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.140e-21
Identity = 45/74 (60.81%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEA++A+S A+RRAR GL++P++PI SF+F GPTGVGK+EL K+LA + F  E A+ R+DMSE+ME+H+VS+L
Sbjct:  571 QDEALEAVSDAVRRARAGLQDPSKPIGSFLFLGPTGVGKTELTKSLAEFLFADEAAITRMDMSEYMEKHSVSRL 644          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.140e-21
Identity = 47/74 (63.51%), Postives = 64/74 (86.49%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A++ AIRRAR G+K+P+RPI SF+F GPTGVGK+ELA+ALA   F +E+A+IR DMSE+ME++++S+L
Sbjct:  585 QDEAVVAVAAAIRRARAGMKDPSRPIGSFLFLGPTGVGKTELARALANCLFDAEDALIRFDMSEYMEKNSISRL 658          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPE_STRPN (ATP-dependent Clp protease ATP-binding subunit clpE OS=Streptococcus pneumoniae GN=clpE PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.795e-21
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV  I+ AIRR RVGL  PNRPI SF+F GPTGVGK+EL+K LA   FGS ++MIR DMSE+ME+H+V+KL
Sbjct:  455 QDDAVDKIAKAIRRNRVGLGTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKL 528          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNPX (Chaperone protein clpB 2 OS=Synechococcus sp. (strain WH8102) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.768e-21
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV A++ AIRRAR G+K+P RP+ SF+F GPTGVGK+ELAKALA   F  EEA++RLDMSEFMER+  ++L
Sbjct:  609 QVEAVAAVAAAIRRARAGMKDPRRPVGSFLFLGPTGVGKTELAKALATSLFDEEEALVRLDMSEFMERNASARL 682          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.227e-21
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEA+  ++ AIRRAR GL +PNRPI SF+F GPTGVGK+E AKALA + F  ++A++R+DMSE+ E+HTV++L
Sbjct:  579 QDEALVLVANAIRRARSGLSDPNRPIGSFLFLGPTGVGKTETAKALAEFLFNDDQAIVRIDMSEYQEKHTVARL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BIFLO (Chaperone protein clpB OS=Bifidobacterium longum GN=clpB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.132e-21
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EA+ A+S A+RR+R G+ +PNRP  SF+F GPTGVGK+ELAKALA + F  E+AM+R+DMSE+ME+ +VS+L
Sbjct:  584 QKEAIAAVSDAVRRSRAGISDPNRPTGSFLFLGPTGVGKTELAKALADFLFDDEKAMVRIDMSEYMEKASVSRL 657          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB1_CHLTE1.255e-2163.51Probable chaperone protein clpB 1 OS=Chlorobium te... [more]
CLPB_RHIME1.639e-2162.16Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPB_RALSO1.639e-2163.51Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
HSP78_SCHPO2.140e-2162.16Heat shock protein 78, mitochondrial OS=Schizosacc... [more]
CLPB_CAUCR2.140e-2160.81Chaperone protein clpB OS=Caulobacter crescentus G... [more]
CLPB2_SYNE72.140e-2163.51Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPE_STRPN2.795e-2166.22ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB2_SYNPX4.768e-2164.86Chaperone protein clpB 2 OS=Synechococcus sp. (str... [more]
CLPB_GEOSL6.227e-2160.81Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_BIFLO8.132e-2160.81Chaperone protein clpB OS=Bifidobacterium longum G... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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