CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.387e-20
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEA++A++ A+RR+R GL++P RPI SFIF G TGVGK+ELAKALA + F  E  M R+DMSE+ E+H+VS+L
Sbjct:  571 QDEAIEAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELAKALAEFLFDDESMMTRIDMSEYQEKHSVSRL 644          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPE_BACSU (ATP-dependent Clp protease ATP-binding subunit clpE OS=Bacillus subtilis GN=clpE PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.812e-20
Identity = 44/74 (59.46%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+ AV+ ++ A+RR+R GLK+ NRP+ SF+F GPTGVGK+EL+K LA   FG+++A+IRLDMSE+ME+H VSK+
Sbjct:  414 QEAAVQKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDAIIRLDMSEYMEKHAVSKI 487          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.812e-20
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q++AVKA+S AIRR R GLK+P RP  SFIF+GP+GVGK+EL+KALA + FG ++A+I++DM EF +R T S+L
Sbjct:  521 QEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRL 594          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.812e-20
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q++AVKA+S AIRR R GLK+P RP  SFIF+GP+GVGK+EL+KALA + FG ++A+I++DM EF +R T S+L
Sbjct:  521 QEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRL 594          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.812e-20
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q++AVKA+S AIRR R GLK+P RP  SFIF+GP+GVGK+EL+KALA + FG ++A+I++DM EF +R T S+L
Sbjct:  521 QEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALANFLFGDDDALIQIDMGEFHDRFTASRL 594          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.812e-20
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV A+S A+RRAR G+ +PNRP  SF+F GPTGVGK+ELAKALA + F  + AM+R+DMSE+ E+H V++L
Sbjct:  574 QSEAVVAVSDAVRRARAGVADPNRPTGSFLFLGPTGVGKTELAKALAEFMFDDDRAMVRIDMSEYGEKHAVARL 647          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_CHLPN (Chaperone protein clpB OS=Chlamydia pneumoniae GN=clpB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.812e-20
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q  AV A+S +IR ARVGL +P RP+  F+F GPTGVGK+ELAKALA   F  EEAM+R DMSE+ME+H++SKL
Sbjct:  573 QPFAVSAVSDSIRAARVGLNDPQRPLGVFLFLGPTGVGKTELAKALADLLFNKEEAMVRFDMSEYMEKHSISKL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.090e-20
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV+A+S A+RR+R G+ +P+RP  SF+F GPTGVGK+ELAKALA + F  E AM+R+DMSE+ E+H+V++L
Sbjct:  577 QTQAVRAVSDAVRRSRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSEYSEKHSVARL 650          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPE (Chaperone protein clpB OS=Mycoplasma penetrans GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.090e-20
Identity = 42/74 (56.76%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEA+K +S  + + RVG+ NPNRPI SF+F GPTGVGK+E+AK+LA   F +E+A++R++MSE+ME+H++S+L
Sbjct:  427 QDEALKLVSDTVLKNRVGINNPNRPIGSFLFVGPTGVGKTEVAKSLAENLFNTEKAIVRINMSEYMEKHSISRL 500          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.090e-20
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A+S A+ RAR GL +P+RPI SFIF GPTGVGK+EL K LA   F +EE ++RLDMSE+ME+H V++L
Sbjct:  578 QEEAVDAVSEAVLRARAGLSDPSRPIGSFIFLGPTGVGKTELCKTLAEALFDTEENIVRLDMSEYMEKHAVARL 651          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_BACTN1.387e-2060.81Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPE_BACSU1.812e-2059.46ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_MYCTU1.812e-2060.81Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCLE1.812e-2060.81Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO1.812e-2060.81Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_CORDI1.812e-2060.81Chaperone protein clpB OS=Corynebacterium diphther... [more]
CLPB_CHLPN1.812e-2063.51Chaperone protein clpB OS=Chlamydia pneumoniae GN=... [more]
CLPB_STRCO3.090e-2058.11Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB_MYCPE3.090e-2056.76Chaperone protein clpB OS=Mycoplasma penetrans GN=... [more]
CLPB_DESVH3.090e-2062.16Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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