CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_CHLTR (Chaperone protein clpB OS=Chlamydia trachomatis GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.090e-20
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q  A+ A+S +IR ARVGL +P RP+  F+F GPTGVGK+ELAKALA   F  EEAMIR DM+E+ME+H+VSKL
Sbjct:  573 QPFAIAAVSDSIRAARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLFNKEEAMIRFDMTEYMEKHSVSKL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_CHLMU (Chaperone protein clpB OS=Chlamydia muridarum GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.090e-20
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q  A+ A+S +IR ARVGL +P RP+  F+F GPTGVGK+ELAKALA   F  EEAMIR DM+E+ME+H+VSKL
Sbjct:  573 QPFAITAVSDSIRSARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLFNKEEAMIRFDMTEYMEKHSVSKL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: HS104_SCHPO (Heat shock protein 104 OS=Schizosaccharomyces pombe GN=hsp104 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.036e-20
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A++ AIR +R GL +PN+PIASF+F GP+G GK+ L KALA++ F  E AMIR+DMSE+ME+H+VS+L
Sbjct:  589 QNEAVTAVANAIRLSRAGLSDPNQPIASFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEKHSVSRL 662          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLP_TRYBB (Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.036e-20
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+ ++ AI RAR GL  PN P ASF+F GPTGVGK+EL KA+AA  F  E+ M+R+DMSE+ME+H+VS+L
Sbjct:  571 QDEAVERVADAIIRARAGLSRPNSPTASFLFLGPTGVGKTELVKAVAAELFDDEKHMVRIDMSEYMEQHSVSRL 644          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_RICCN (Chaperone protein clpB OS=Rickettsia conorii GN=clpB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.036e-20
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+A+K +S A+RR+R G+++ NRP+ SF+F GPTGVGK+EL KALA + F    A++R+DMSE+ME+H +S+L
Sbjct:  572 QDKAIKGVSDAVRRSRAGIQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDDRNAILRIDMSEYMEKHAISRL 645          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_MYCGA (Chaperone protein clpB OS=Mycoplasma gallisepticum GN=clpB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.036e-20
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD A+K +S A+ R R  + +PNRPI SF+F GPTGVGK+E+AK LA   F +E+AM+R+DMSEFMERH+V KL
Sbjct:  433 QDHAIKNVSDAVLRGRAQINDPNRPIGSFLFLGPTGVGKTEVAKKLAYCLFDNEKAMVRIDMSEFMERHSVDKL 506          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.036e-20
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q  AV+A++ AIRR R GL +P RPI SF+F GPTGVGK+EL + LA + F SEE M+R+DMSEFME+H+V++L
Sbjct:  578 QKTAVEAVANAIRRNRAGLSDPKRPIGSFLFLGPTGVGKTELCRTLAQFLFDSEENMVRIDMSEFMEKHSVARL 651          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.036e-20
Identity = 43/74 (58.11%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV A+S A+RR+R G+ +PNRP  SF+F GPTGVGK+ELAKA++ + F  E AM+R+DMSE+ E+H+V++L
Sbjct:  576 QHEAVTAVSDAVRRSRAGVADPNRPTGSFLFLGPTGVGKTELAKAVSEFLFDDERAMVRIDMSEYSEKHSVARL 649          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_CHLCV (Chaperone protein clpB OS=Chlamydophila caviae GN=clpB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.036e-20
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q  A+ A+S +IR ARVGL +P RP+  F+F GPTGVGK+ELAKALA   F  EEAM+R DM+E+ME+H+VSKL
Sbjct:  573 QPFAISAVSDSIRAARVGLSDPQRPLGVFLFLGPTGVGKTELAKALADLLFNKEEAMVRFDMTEYMEKHSVSKL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.884e-20
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q  AV A+S A+RR+R G+ +PNRP  +F+F GPTGVGK+ELAKALA + F  E AM+R+DMSE+ E+HTV++L
Sbjct:  575 QKAAVTAVSDAVRRSRAGVSDPNRPTGAFMFLGPTGVGKTELAKALADFLFDDERAMVRIDMSEYGEKHTVARL 648          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_CHLTR3.090e-2063.51Chaperone protein clpB OS=Chlamydia trachomatis GN... [more]
CLPB_CHLMU3.090e-2063.51Chaperone protein clpB OS=Chlamydia muridarum GN=c... [more]
HS104_SCHPO4.036e-2060.81Heat shock protein 104 OS=Schizosaccharomyces pomb... [more]
CLP_TRYBB4.036e-2062.16Heat shock protein 100 OS=Trypanosoma brucei bruce... [more]
CLPB_RICCN4.036e-2055.41Chaperone protein clpB OS=Rickettsia conorii GN=cl... [more]
CLPB_MYCGA4.036e-2060.81Chaperone protein clpB OS=Mycoplasma gallisepticum... [more]
CLPB_DICNO4.036e-2060.81Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]
CLPB_COREF4.036e-2058.11Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB_CHLCV4.036e-2062.16Chaperone protein clpB OS=Chlamydophila caviae GN=... [more]
CLPB_MYCTU6.884e-2059.46Chaperone protein clpB OS=Mycobacterium tuberculos... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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