CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPA_ECOL6 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O6 GN=clpA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.322e-14
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+A++A++ AI+ AR GL + ++P+ SF+F+GPTGVGK+E+   L+    G E  ++R DMSE+MERHTVS+L
Sbjct:  463 QDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK-ALGIE--LLRFDMSEYMERHTVSRL 533          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPA_ECO57 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O157:H7 GN=clpA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.322e-14
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+A++A++ AI+ AR GL + ++P+ SF+F+GPTGVGK+E+   L+    G E  ++R DMSE+MERHTVS+L
Sbjct:  463 QDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK-ALGIE--LLRFDMSEYMERHTVSRL 533          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPV1_PSEAE (Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.642e-13
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD A++ I+  I+ +R GL NP++PI  F+ +G +GVGK+E A ALA   +G E+ +I ++MSEF E HTVS L
Sbjct:  608 QDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTL 681          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_YEREN (Chaperone protein clpB OS=Yersinia enterocolitica GN=clpB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.537e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q  A+  +S  I  AR G+ +P +P+  F+  GP+GVGK+E A A+A   +G E+ +I ++MSE+ E HTVS L
Sbjct:  594 QPHALVQLSENIMTARAGMADPRKPLGVFMLVGPSGVGKTETALAIAESMYGGEQNLITINMSEYQESHTVSSL 667          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPA_ECOL64.322e-1451.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECO574.322e-1451.35ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPV1_PSEAE1.642e-1348.65Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 P... [more]
CLPB_YEREN1.537e-1143.24Chaperone protein clpB OS=Yersinia enterocolitica ... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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