CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S+EAM+R+DMSEFME+H+VS+L
Sbjct:  573 QNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRL 646
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 50/74 (67.57%), Postives = 65/74 (87.84%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV+A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H+VS+L
Sbjct:  573 QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 50/74 (67.57%), Postives = 65/74 (87.84%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV+A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H+VS+L
Sbjct:  573 QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 50/74 (67.57%), Postives = 65/74 (87.84%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV+ +S AI+R+R GL +PNRPIASFIF GPTGVGK+ELAKALA++ F  E AM+R+DMSE+ME+H+VS+L
Sbjct:  580 QEEAVRIVSEAIQRSRAGLADPNRPIASFIFLGPTGVGKTELAKALASFLFDDENAMVRIDMSEYMEKHSVSRL 653
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S+EAM+R+DMSEFME+H+VS+L
Sbjct:  573 QNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRL 646
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S+EAM+R+DMSEFME+H+VS+L
Sbjct:  573 QNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRL 646
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL KALA + F S+EAM+R+DMSEFME+H+VS+L
Sbjct:  573 QNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRL 646
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV+AIS A+RRAR GL++PNRPI SFIF GPTGVGK+EL KALA++ F  + AM+R+DMSEFME+H+VS+L
Sbjct:  573 QGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVSRL 646
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV+AIS A+RRAR GL++PNRPI SFIF GPTGVGK+EL KALA++ F  + AM+R+DMSEFME+H+VS+L
Sbjct:  573 QGEAVQAISKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVSRL 646
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+ AVKA++ AIRRAR GLK+P RPIASF+F GPTGVGK+EL+KALA   FG E+A+IRLDMSEF E H+V+KL
Sbjct:  694 QEHAVKAVAEAIRRARAGLKDPKRPIASFLFLGPTGVGKTELSKALAELLFGDEDALIRLDMSEFKEEHSVAKL 767
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_SHIFL1.751e-2368.92Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_SALTY1.751e-2367.57Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI1.751e-2367.57Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB_GLOVI1.751e-2367.57Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_ECOLI1.751e-2368.92Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL61.751e-2368.92Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO571.751e-2368.92Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_BRUSU1.751e-2368.92Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BRUME1.751e-2368.92Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_AQUAE1.751e-2370.27Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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