CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.751e-23
Identity = 49/74 (66.22%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A++ AI+R+R GL +PNRP ASF+F GPTGVGK+ELAKALA+Y F +E+A++R+DMSE+ME+H VS+L
Sbjct:  579 QDEAVTAVADAIQRSRAGLADPNRPTASFVFLGPTGVGKTELAKALASYMFDTEDALVRIDMSEYMEKHAVSRL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.287e-23
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q++AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG E+AMIR+DMSEFME+H VS+L
Sbjct:  513 QNDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEEDAMIRVDMSEFMEKHAVSRL 586          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.287e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A+S A+RR+R GL++PNRPI SF+F GPTGVGK+EL KALA   F  E AM+R+DMSEFMERH+VS+L
Sbjct:  596 QDEAVTAVSDAVRRSRSGLQDPNRPIGSFLFLGPTGVGKTELCKALAEVMFDDESAMVRIDMSEFMERHSVSRL 669          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.287e-23
Identity = 48/74 (64.86%), Postives = 64/74 (86.49%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A++ AIRR+R GL +PNRP+ SF+F GPTGVGK+EL KALA + F +E+AM+R+DMSEFME+H+V++L
Sbjct:  575 QDEAVNAVANAIRRSRAGLSDPNRPVGSFLFLGPTGVGKTELCKALAVFLFDTEDAMVRIDMSEFMEKHSVARL 648          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.986e-23
Identity = 49/74 (66.22%), Postives = 64/74 (86.49%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV+A+S A+RRAR GL++PNRPI SFIF GPTGVGK+EL KALA++ F  + AM+R+DMSEFME+H+V++L
Sbjct:  573 QGEAVQAVSKAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALASFLFDDDSAMVRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.986e-23
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEA+ A++ AIRRAR GLK+PNRPI SF+F GPTGVGK+ELAK LAA  F +EE M+R+DMSE+ E+HTV++L
Sbjct:  563 QDEAIVAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAASLFDTEENMVRIDMSEYQEKHTVARL 636          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPE_LACLM (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.900e-23
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV  IS AIRR+RVGL  PNRPI SF+F GPTGVGK+ELAK LA   FGS E+MIR DMSE+ME+H+V+KL
Sbjct:  449 QDEAVDKISKAIRRSRVGLGKPNRPIGSFLFVGPTGVGKTELAKQLAKELFGSSESMIRFDMSEYMEKHSVAKL 522          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.900e-23
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q++AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRL 586          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.900e-23
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q++AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRL 586          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.094e-23
Identity = 47/74 (63.51%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H+V++L
Sbjct:  573 QDEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEKHSVARL 646          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB2_ANASP1.751e-2366.22Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPC_STAHJ2.287e-2370.27ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_RHOBA2.287e-2368.92Chaperone protein clpB OS=Rhodopirellula baltica G... [more]
CLPB_COXBU2.287e-2364.86Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB_RHILO2.986e-2366.22Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB_MEIRU2.986e-2367.57Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPE_LACLM3.900e-2371.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAES3.900e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ3.900e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_XYLFT5.094e-2363.51Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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