CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.094e-23
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A++ AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA + F SE+AM+R+DMSEFME+H+VS+L
Sbjct:  573 QEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEKHSVSRL 646
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRL 586
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRL 586
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRL 586
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRL 586
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAAM (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpC PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRL 586
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAAC (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRL 586
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRL 586
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRL 586
[Close]
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3 
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRL 586
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_HAEIN5.094e-2366.22Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPC_STAAW6.653e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAS6.653e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR6.653e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAN6.653e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAM6.653e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAC6.653e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAB6.653e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA86.653e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA36.653e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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