CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F S EAMIR+DMSEFME+H+VS+L
Sbjct:  573 QEEAIKVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEKHSVSRL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 50/74 (67.57%), Postives = 64/74 (86.49%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+A+S AI RAR G+++PNRP+ SF+F GPTGVGK+ELAKALA   F SEE M+R+DMSE+ME+H+VS+L
Sbjct:  576 QDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEYMEKHSVSRL 649          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_LACLA (Chaperone protein clpB OS=Lactococcus lactis subsp. lactis GN=clpB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.653e-23
Identity = 50/74 (67.57%), Postives = 64/74 (86.49%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+A+S AI RAR G+++PNRP+ SF+F GPTGVGK+ELAKALA   F SEE M+R+DMSE+ME+H+VS+L
Sbjct:  576 QDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEYMEKHSVSRL 649          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPE_LACLA (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. lactis GN=clpE PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.689e-23
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV  I+ AIRR+RVGL  PNRPI SF+F GPTGVGK+ELAK LA   FGS E+MIR DMSE+ME+H+V+KL
Sbjct:  449 QDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFVGPTGVGKTELAKQLAKELFGSSESMIRFDMSEYMEKHSVAKL 522          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.689e-23
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q +AV +IS A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG ++AMIR+DMSEFME+H VS+L
Sbjct:  513 QKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRL 586          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.689e-23
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV A++ AIRRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   F  E+AMIR+DMSE+MERH  S+L
Sbjct:  516 QSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEVMFADEDAMIRIDMSEYMERHATSRL 589          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.689e-23
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A++ AI+R+R GL +PNRP ASFIF GPTGVGK+ELAKALA   F +EEA++R+DMSE+ME+H VS+L
Sbjct:  579 QDEAVTAVAEAIQRSRAGLSDPNRPTASFIFLGPTGVGKTELAKALAKNLFDTEEALVRIDMSEYMEKHAVSRL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.482e-22
Identity = 46/74 (62.16%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F S++AM+R+DMSEFME+H+V++L
Sbjct:  573 QEEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.482e-22
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV  +S AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA++ F SE+AM+R+DMSEFME+H+V++L
Sbjct:  573 QSEAVAVVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLASFMFDSEDAMVRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.482e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV A+S A+RRAR GL++PNRP+ SF+F GPTGVGK+EL KALA Y F  E AM+R+DMSEFME+H+V++L
Sbjct:  574 QFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFDDETAMVRIDMSEFMEKHSVARL 647          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_XANCP6.653e-2366.22Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB_LACLM6.653e-2367.57Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_LACLA6.653e-2367.57Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPE_LACLA8.689e-2370.27ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAS18.689e-2368.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_OCEIH8.689e-2368.92Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPB2_SYNY38.689e-2367.57Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB_XYLFA1.482e-2262.16Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_VIBPA1.482e-2264.86Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_RHOPA1.482e-2266.22Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
back to top