CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.482e-22
Identity = 48/74 (64.86%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A+S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F +EEA++R+DMSEFME+H+V++L
Sbjct:  573 QDEAVVAVSNAVRRSRAGLADPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEALVRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.936e-22
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EA+K +S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F S EAMIR+DMSEFME+H+V++L
Sbjct:  573 QNEAIKVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.936e-22
Identity = 48/74 (64.86%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A+S A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F +EEAM+R+DMSEFME+H+V++L
Sbjct:  573 QEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.936e-22
Identity = 47/74 (63.51%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD A+ ++S AIRRAR GL +PNRP+ SF+F GP+GVGK+ELAKALA + F S +AM+R+DMSE+ME+HTV++L
Sbjct:  563 QDRAIVSVSDAIRRARAGLNDPNRPLGSFMFLGPSGVGKTELAKALAEFLFDSSDAMVRIDMSEYMEKHTVARL 636          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.936e-22
Identity = 48/74 (64.86%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV+A+S A+RR+R GL++PNRPI SFIF GPTGVGK+EL K+LA + F  E AM+RLDMSE+ME+H+V++L
Sbjct:  575 QGEAVQAVSKAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKSLARFLFDDETAMVRLDMSEYMEKHSVARL 648          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 47/74 (63.51%), Postives = 66/74 (89.19%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q++AV+A++ AI+R+R GL +PNRPIASF+F GPTGVGK+EL+KALA+  F SE A++R+DMSE+ME+H+VS+L
Sbjct:  579 QEQAVQAVADAIQRSRAGLSDPNRPIASFLFLGPTGVGKTELSKALASQLFDSEAALVRIDMSEYMEKHSVSRL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EA++A+S AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA + F  E AM+R+DMSEFME+H+VS+L
Sbjct:  572 QHEAIEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDDENAMVRIDMSEFMEKHSVSRL 645          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+ +S AIRR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F SEE +IR+DMSEFME+H+V++L
Sbjct:  578 QDEAVRLVSDAIRRSRSGLADPNRPYGSFLFLGPTGVGKTELCKALAGFLFDSEEHLIRVDMSEFMEKHSVARL 651          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV A++ A+RR+R GL++PNRP+ SF+F GPTGVGK+EL KALA Y F  E AM+RLDMSE+ME+H+VS+L
Sbjct:  574 QAEAVHAVATAVRRSRAGLQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFNDETAMVRLDMSEYMEKHSVSRL 647          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BLOFL (Chaperone protein clpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+ IS AIRR+R GL +P RPI SF+F GPTGVGK+EL KAL+ + F ++ AM+R+DMSEFME+H+VSKL
Sbjct:  575 QDEAVRVISNAIRRSRSGLSDPKRPIGSFMFLGPTGVGKTELCKALSQFLFDTDNAMVRIDMSEFMEKHSVSKL 648          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_PSEAE1.482e-2264.86Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_XANAC1.936e-2264.86Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_PSESM1.936e-2264.86Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPB_DEIRA1.936e-2263.51Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_AGRT51.936e-2264.86Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_PROMM2.528e-2263.51Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_PASMU2.528e-2264.86Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_NITEU2.528e-2266.22Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_BRAJA2.528e-2264.86Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB_BLOFL2.528e-2266.22Chaperone protein clpB OS=Blochmannia floridanus G... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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