CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV  +S A+ RAR G+K+PNRPI SFIF GPTGVGK+ELAK LA   F SEE MIR+DMSE+ME+H VS+L
Sbjct:  579 QEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV  +S A+ RAR G+K+PNRPI SFIF GPTGVGK+ELAK LA   F SEE MIR+DMSE+ME+H VS+L
Sbjct:  579 QEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BACAN (Chaperone protein clpB OS=Bacillus anthracis GN=clpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV  +S A+ RAR G+K+PNRPI SFIF GPTGVGK+ELAK LA   F SEE MIR+DMSE+ME+H VS+L
Sbjct:  579 QEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.528e-22
Identity = 48/74 (64.86%), Postives = 65/74 (87.84%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q++AV A++ AI+R+R GL +PNRPIASF+F GPTGVGK+EL+KALA   F S++AM+R+DMSE+ME+HTVS+L
Sbjct:  578 QNQAVTAVADAIQRSRAGLSDPNRPIASFLFLGPTGVGKTELSKALANRLFDSDDAMVRIDMSEYMEKHTVSRL 651          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.302e-22
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV A++ AIRR+R GL +PNRPI SF+F GPTGVGK+EL K+LA + F SE A++R+DMSEFME+H VS+L
Sbjct:  573 QNEAVDAVANAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLARFLFDSESALVRIDMSEFMEKHAVSRL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.312e-22
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV A++ A+RR+R GL +PNRP  SF+F GPTGVGK+EL KALA + F +EEAM+R+DMSEFME+H+V++L
Sbjct:  573 QSEAVTAVANAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.312e-22
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAVK ++ AI RAR G+++P RPI SFIF GPTGVGK+ELAK LA   F SEE M+RLDMSE+ ERHTVS+L
Sbjct:  581 QDEAVKLVTDAIIRARSGIRDPRRPIGSFIFLGPTGVGKTELAKTLARTLFDSEENMVRLDMSEYQERHTVSRL 654          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_STAAW (Chaperone protein clpB OS=Staphylococcus aureus (strain MW2) GN=clpB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.632e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H VS+L
Sbjct:  577 QDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRL 650          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_STAAS (Chaperone protein clpB OS=Staphylococcus aureus (strain MSSA476) GN=clpB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.632e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H VS+L
Sbjct:  577 QDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRL 650          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_STAAR (Chaperone protein clpB OS=Staphylococcus aureus (strain MRSA252) GN=clpB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.632e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H VS+L
Sbjct:  577 QDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRL 650          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_BACCR2.528e-2267.57Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_BACC12.528e-2267.57Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_BACAN2.528e-2267.57Chaperone protein clpB OS=Bacillus anthracis GN=cl... [more]
CLPB1_SYNPX2.528e-2264.86Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPB_SHEON3.302e-2264.86Chaperone protein clpB OS=Shewanella oneidensis GN... [more]
CLPB_PSEPK4.312e-2263.51Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB2_STRAW4.312e-2268.92Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_STAAW5.632e-2266.22Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAS5.632e-2266.22Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAR5.632e-2266.22Chaperone protein clpB OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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