CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_STAAN (Chaperone protein clpB OS=Staphylococcus aureus (strain N315) GN=clpB PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.632e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H VS+L
Sbjct:  577 QDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRL 650          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_STAAM (Chaperone protein clpB OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpB PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.632e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H VS+L
Sbjct:  577 QDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRL 650          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_STAAC (Chaperone protein clpB OS=Staphylococcus aureus (strain COL) GN=clpB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.632e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LAA  F SE+ MIR+DMSE+ME+H VS+L
Sbjct:  577 QDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRL 650          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.632e-22
Identity = 47/74 (63.51%), Postives = 63/74 (85.14%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+EAV+A++ AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA + F SE+ M+R+DMSEFME+H+V++L
Sbjct:  573 QNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFMFDSEDNMVRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV+ ++ AIRR+R GL +PNRPI SF+F GPTGVGK+EL K LA + F SE+AM+R+DMSEFME+H+V++L
Sbjct:  573 QKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_PROFR (Chaperone protein clpB (Fragment) OS=Propionibacterium freudenreichii subsp. shermanii GN=clpB PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q  AVKA+S A+RR+R G+ +PNRP  SF+F GPTGVGK+ELAKALA + F  E AM+R+DMSE+ME+H+VS+L
Sbjct:  576 QQAAVKAVSDAVRRSRAGISDPNRPTGSFMFLGPTGVGKTELAKALADFLFDDETAMVRIDMSEYMEKHSVSRL 649          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_PARUW (Chaperone protein clpB OS=Protochlamydia amoebophila (strain UWE25) GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 50/74 (67.57%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q+ AV A+S AIRR+R GL +PNRP+  F+F GPTGVGK+ELAKALA   F  +EA+IRLDMSE+ME+HTVSKL
Sbjct:  574 QEIAVSAVSEAIRRSRSGLSDPNRPMGVFLFLGPTGVGKTELAKALAFQLFNQDEALIRLDMSEYMEKHTVSKL 647          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+A+S AIRR+R GL +PN+P  SF+F GPTGVGK+EL KALA + F SE+ +IR+DMSE+ME+H V++L
Sbjct:  577 QDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEYMEKHAVARL 650          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+A+S AIRR+R GL +PN+P  SF+F GPTGVGK+EL KALA + F SE+ +IR+DMSE+ME+H V++L
Sbjct:  577 QDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEYMEKHAVARL 650          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV+ +S A+ RAR G+K+P RPI SFIF GPTGVGK+ELAKALA   F SE+ MIR+DMSE+ME+H+VS+L
Sbjct:  579 QDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVSRL 652          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_STAAN5.632e-2266.22Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAM5.632e-2266.22Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAC5.632e-2266.22Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_PHOPR5.632e-2263.51Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_VIBCH7.355e-2263.51Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_PROFR7.355e-2263.51Chaperone protein clpB (Fragment) OS=Propionibacte... [more]
CLPB_PARUW7.355e-2267.57Chaperone protein clpB OS=Protochlamydia amoebophi... [more]
CLPB_NEIMB7.355e-2263.51Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_NEIMA7.355e-2263.51Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_LISMO7.355e-2266.22Chaperone protein clpB OS=Listeria monocytogenes G... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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