CX296525

Overview
NameCX296525
Unique NameCX296525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length224
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV+ +S A+ RAR G+K+P RPI SFIF GPTGVGK+ELAKALA   F SE+ MIR+DMSE+ME+H+VS+L
Sbjct:  579 QDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVSRL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_LISIN (Chaperone protein clpB OS=Listeria innocua GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV+ +S A+ RAR G+K+P RPI SFIF GPTGVGK+ELAKALA   F SE+ MIR+DMSE+ME+H+VS+L
Sbjct:  579 QDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKALAYNMFDSEDHMIRIDMSEYMEKHSVSRL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_ENTFA (Chaperone protein clpB OS=Enterococcus faecalis GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV A+S A+ R+R GL++PNRP+ SF+F GPTGVGK+ELAKALA   F SE+ M+R+DMSE+ME+H VS+L
Sbjct:  576 QDEAVDAVSDAVIRSRAGLQDPNRPLGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRL 649          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+ +S AIRR+R GL +P+RP  SF+F GPTGVGK+EL +ALA + F SEE MIR+DMSEFME+H+V++L
Sbjct:  579 QDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDMSEFMEKHSVARL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+ +S AIRR+R GL +P+RP  SF+F GPTGVGK+EL +ALA + F SEE MIR+DMSEFME+H+V++L
Sbjct:  579 QDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDMSEFMEKHSVARL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.355e-22
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QDEAV+ +S AIRR+R GL +P+RP  SF+F GPTGVGK+EL +ALA + F SEE MIR+DMSEFME+H+V++L
Sbjct:  579 QDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDMSEFMEKHSVARL 652          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.255e-21
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV+ ++ AIRR+R GL +PN+PI SF+F GPTGVGK+EL K LA + F SE+AM+R+DMSEFME+H+V++L
Sbjct:  573 QKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.255e-21
Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            Q EAV+ ++ AIRR+R GL +PN+PI SF+F GPTGVGK+EL K LA + F SE+AM+R+DMSEFME+H+V++L
Sbjct:  573 QKEAVEVVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLANFMFDSEDAMVRIDMSEFMEKHSVARL 646          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_STAES (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.255e-21
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LA+  F SE+ MIR+DMSE+ME+H VS+L
Sbjct:  577 QDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKHAVSRL 650          
BLAST of CX296525 vs. ExPASy Swiss-Prot
Match: CLPB_STAEQ (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.255e-21
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 QDEAVKAISPAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 224
            QD+AV  +S A+ RAR G+K+PNRPI SF+F GPTGVGK+ELAK+LA+  F SE+ MIR+DMSE+ME+H VS+L
Sbjct:  577 QDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKHAVSRL 650          
The following BLAST results are available for this feature:
BLAST of CX296525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CLPB_LISMF7.355e-2266.22Chaperone protein clpB OS=Listeria monocytogenes s... [more]
CLPB_LISIN7.355e-2266.22Chaperone protein clpB OS=Listeria innocua GN=clpB... [more]
CLPB_ENTFA7.355e-2264.86Chaperone protein clpB OS=Enterococcus faecalis GN... [more]
CLPB_BORPE7.355e-2264.86Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_BORPA7.355e-2264.86Chaperone protein clpB OS=Bordetella parapertussis... [more]
CLPB_BORBR7.355e-2264.86Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB_VIBVY1.255e-2162.16Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_VIBVU1.255e-2162.16Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_STAES1.255e-2164.86Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_STAEQ1.255e-2164.86Chaperone protein clpB OS=Staphylococcus epidermid... [more]

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Properties
Property NameValue
Genbank descriptionC05142E01SK FerrChloL1 Citrus clementina cDNA clone C05142E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296525 ID=CX296525; Name=CX296525; organism=Citrus clementina; type=EST; length=224bp
GTCAGGACGAAGCTGTCAAAGCTATTAGTCCTGCTATCCGGCGTGCACGT
GTTGGACTCAAAAACCCCAATCGACCAATTGCTAGTTTCATCTTTTCTGG
TCCAACTGGTGTCGGGAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATT
ACTTTGGCTCAGAGGAGGCCATGATCAGGCTTGATATGAGTGAGTTCATG
GAAAGACACACTGTTTCCAAGCTC
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