CX296528

Overview
NameCX296528
Unique NameCX296528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3690 contig Ccv1_Contig3690:430..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.996e-32
Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DTLLMGADYYETDADR+FLAAKGSVPIGIG            NARIGD+VKI+NSD+VQEAARETDGYFIKSGIVTIIKDA+IPSGT+I
Sbjct:  413 DTLLMGADYYETDADRKFLAAKGSVPIGIG------------NARIGDDVKIINSDNVQEAARETDGYFIKSGIVTIIKDAMIPSGTVI 489          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_CYAA5 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glgC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.385e-25
Identity = 52/89 (58.43%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            D+LLMGADYYE+   R+ L  +G +P+GIGK S I+RAI+DKNARIG NV IVN ++++E+ RE DG++I++GIV +IK+A+IP GT+I
Sbjct:  341 DSLLMGADYYESLETRQSLLDQGKIPVGIGKGSTIRRAIVDKNARIGQNVTIVNKENIEESNREDDGFYIRNGIVVVIKNAVIPDGTVI 429          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGL3_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.413e-24
Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DT+++GADYYETDA+ R   A+G VP+GIG+N+ IK  IIDKNARIG NV I NS+ VQEA R ++G+++ SGI  I K++ IP GT+I
Sbjct:  395 DTVMLGADYYETDAEIRSQLAEGKVPLGIGENTRIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYMASGITVISKNSTIPDGTVI 483          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_ANAVT (Glucose-1-phosphate adenylyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.821e-24
Identity = 50/89 (56.18%), Postives = 72/89 (80.90%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            ++LLMGAD+Y+   +R+    KG +P+GIG ++ I+RAIIDKNARIG +VKI+N D+VQEA RE+ G++I+SGIV ++K+A+I  GTII
Sbjct:  341 ESLLMGADFYQASVERQCSIDKGDIPVGIGPDTIIRRAIIDKNARIGHDVKIINKDNVQEADRESQGFYIRSGIVVVLKNAVITDGTII 429          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_ANASP (Glucose-1-phosphate adenylyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glgC PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.821e-24
Identity = 50/89 (56.18%), Postives = 72/89 (80.90%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            ++LLMGAD+Y+   +R+    KG +P+GIG ++ I+RAIIDKNARIG +VKI+N D+VQEA RE+ G++I+SGIV ++K+A+I  GTII
Sbjct:  341 ESLLMGADFYQASVERQCSIDKGDIPVGIGPDTIIRRAIIDKNARIGHDVKIINKDNVQEADRESQGFYIRSGIVVVLKNAVITDGTII 429          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 9.929e-24
Identity = 49/89 (55.06%), Postives = 71/89 (79.78%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DT+++GADYYET+A+   L A+G+VPIGIG+N+ I+  IIDKNAR+G NV I NS+ +QEA R +DG++I+SGI  I+K+++I  G +I
Sbjct:  434 DTVMLGADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGITVILKNSVIKDGVVI 522          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_SYNPW (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain WH7803) GN=glgC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.929e-24
Identity = 47/89 (52.81%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            D+LLMG+D++E+ ++R  L  +G +P+G+GK + +KRAI+DKNARIG NV IVN D V+EA R   G++I++GIV ++K+A IP GT+I
Sbjct:  343 DSLLMGSDFFESSSERAVLRERGGIPLGVGKGTTVKRAILDKNARIGSNVTIVNKDHVEEADRPEHGFYIRNGIVVVVKNASIPDGTVI 431          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP7 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glgC PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            D++LMGADYYE+   R+ +   G VP GIG  + I+RAIIDKNARIG NV I+N D ++EA RE +G+ I+SGIV +IK+A IP GT+I
Sbjct:  341 DSMLMGADYYESSTKRKAVLEAGKVPQGIGAGTTIRRAIIDKNARIGRNVLIINKDRIEEAEREDEGFLIRSGIVVVIKNATIPDGTVI 429          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.212e-23
Identity = 49/89 (55.06%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DT +MGADYY+T+++   L A+G VPIGIG+N+ I++ IIDKNA+IG NV I+N D VQEA R  +G++I+SGI+ I++ A I  GT+I
Sbjct:  382 DTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDKNAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIILEKATIRDGTVI 470          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_NOSP7 (Glucose-1-phosphate adenylyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glgC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.773e-23
Identity = 49/89 (55.06%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            ++LLMGAD+Y+   +R+    +  +P+GIG ++ I+ AIIDKNARIG +VKIVN D+VQEA RE  G++I+SGIV ++K+A+IP GTII
Sbjct:  341 ESLLMGADFYQASVERQCSLIENDIPVGIGTDTIIRGAIIDKNARIGHDVKIVNKDNVQEAERENQGFYIRSGIVVVLKNAVIPDGTII 429          
The following BLAST results are available for this feature:
BLAST of CX296528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLGS_BETVU1.996e-3279.78Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_CYAA51.385e-2558.43Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGL3_SOLTU3.413e-2458.43Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_ANAVT5.821e-2456.18Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_ANASP5.821e-2456.18Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGL1_ARATH9.929e-2455.06Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_SYNPW9.929e-2452.81Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP71.297e-2357.30Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGL1_SOLTU2.212e-2355.06Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_NOSP73.773e-2355.06Glucose-1-phosphate adenylyltransferase OS=Nostoc ... [more]

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Properties
Property NameValue
Genbank descriptionC05142E09SK FerrChloL1 Citrus clementina cDNA clone C05142E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296528 ID=CX296528; Name=CX296528; organism=Citrus clementina; type=EST; length=372bp
CCGGGCTGCAGATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGAGA
TACTTTACTTATGGGAGCAGATTATTATGAGACGGATGCGGACAGGAGGT
TTTTGGCTGCAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAATTCTCAC
ATCAAGAGAGCAATAATTGACAAAAATGCTCGAATTGGGGATAATGTGAA
GATCGTCAACAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACAGATGGAT
ACTTCATCAAGAGCGGGATTGTCACAATAATCAAGGATGCCTTGATTCCC
AGTGGAACCATAATCTAAACTGTCGTCTTCTCTTCTCAGTTTCATCCCAA
GCTACGGGCACCTTCCCCTCTA
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