CX296528

Overview
NameCX296528
Unique NameCX296528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3690 contig Ccv1_Contig3690:430..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP6 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glgC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 58/116 (50.00%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    4 GCRFGRGLVPNSARG------------DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            GC   +  V NS  G            D LLMGAD+YET   R    A G VP+GIG  S I+RAI+DKNA IG NV+IVN D V+EA RE  G+ I+SGIV ++K A+IP  T+I
Sbjct:  315 GCILKQCTVQNSVLGIRSRIEADCVIQDALLMGADFYETSELRHQNRANGKVPMGIGSGSTIRRAIVDKNAHIGQNVQIVNKDHVEEADREDLGFMIRSGIVVVVKGAVIPDNTVI 430          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_SYNE7 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=glgC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 58/116 (50.00%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    4 GCRFGRGLVPNSARG------------DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            GC   +  V NS  G            D LLMGAD+YET   R    A G VP+GIG  S I+RAI+DKNA IG NV+IVN D V+EA RE  G+ I+SGIV ++K A+IP  T+I
Sbjct:  315 GCILKQCTVQNSVLGIRSRIEADCVIQDALLMGADFYETSELRHQNRANGKVPMGIGSGSTIRRAIVDKNAHIGQNVQIVNKDHVEEADREDLGFMIRSGIVVVVKGAVIPDNTVI 430          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP2 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=glgC PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.873e-22
Identity = 49/89 (55.06%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DT++MGADYY+    R+    +G  PIGIG+ + I+RAIIDKNARIG NV IVN ++V+E+ RE  GY+I+SGI  ++K+A+IP GT+I
Sbjct:  341 DTMIMGADYYQPYEKRQDCLRRGKPPIGIGEGTTIRRAIIDKNARIGKNVMIVNKENVEESNREELGYYIRSGITVVLKNAVIPDGTVI 429          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP8 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glgC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 48/89 (53.93%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DT+LMGADYYE+ + R   A +G +P+GIG+ S I+RAI+DKNARIG NV IVN +++ E+ +E  G++I++GIV I+K+A I  GT+I
Sbjct:  341 DTMLMGADYYESPSLRESKAQEGKIPMGIGEGSTIRRAIVDKNARIGRNVTIVNKENIDESNQEESGFYIRNGIVVILKNATIADGTVI 429          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.448e-22
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DTL++GADYY+T+++   L A+G VPIGIGK++ I++ IIDKNA+IG NV I+N   VQEA R  +G++I+SGI  I++ A I  GT+I
Sbjct:  435 DTLMLGADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.448e-22
Identity = 46/89 (51.69%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DT++MGADYY+T+++   L A+G VP+G+G+N+ IK  IIDKNA+IG +V I N+D V+EA R  +G++I+SGI  I+K+A I  G +I
Sbjct:  434 DTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGL1_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit (Fragment) OS=Triticum aestivum GN=AGA.1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.116e-22
Identity = 47/89 (52.81%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DT+++GAD+YETD +R    A+G VPIGIG+N+ I+  IIDKNARIG NV I N++ VQEA R ++G+ I+SGI  ++K+++I  G +I
Sbjct:  213 DTVMLGADFYETDMERGDQLAEGKVPIGIGENTSIQNCIIDKNARIGKNVTIANAEGVQEADRASEGFHIRSGITVVLKNSVIADGLVI 301          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_SYNY3 (Glucose-1-phosphate adenylyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glgC PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.293e-22
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DTL+MG D+YE+ ++R  L A+G +  GIG  + I+RAIIDKNARIG NV IVN ++VQEA RE  G++I++GIV +IK+  I  GT+I
Sbjct:  351 DTLVMGNDFYESSSERDTLKARGEIAAGIGSGTTIRRAIIDKNARIGKNVMIVNKENVQEANREELGFYIRNGIVVVIKNVTIADGTVI 439          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.214e-21
Identity = 46/89 (51.69%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            DT++MGADYY+T+ +   L A+G VPIG+G N+ I+  IIDKNA+IG +V I+N + V+EA R  +G++I+SGI  I+K+A I  GT+I
Sbjct:  431 DTMMMGADYYQTECEIASLLAEGKVPIGVGPNTKIQNCIIDKNAKIGKDVVILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519          
BLAST of CX296528 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP4 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.214e-21
Identity = 47/89 (52.81%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   49 DTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 315
            + LLMGAD+Y+  A+R       SVP+GIG ++ ++RAI+DKNA IG NVKIVN D V+EA RE++G++I++GIV ++K+A+IP  T+I
Sbjct:  341 NALLMGADFYQPFAERDHKIKNNSVPLGIGADTIVRRAIVDKNACIGRNVKIVNKDHVEEANRESEGFYIRNGIVVVLKNAVIPDNTVI 429          
The following BLAST results are available for this feature:
BLAST of CX296528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLGC_SYNP61.098e-2250.00Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNE71.098e-2250.00Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNP21.873e-2255.06Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP82.446e-2253.93Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGL4_ARATH5.448e-2253.93Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL1_BETVU5.448e-2251.69Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_WHEAT7.116e-2252.81Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_SYNY39.293e-2255.06Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGL2_SOLTU1.214e-2151.69Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_CYAP41.214e-2152.81Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]

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Properties
Property NameValue
Genbank descriptionC05142E09SK FerrChloL1 Citrus clementina cDNA clone C05142E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296528 ID=CX296528; Name=CX296528; organism=Citrus clementina; type=EST; length=372bp
CCGGGCTGCAGATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGAGA
TACTTTACTTATGGGAGCAGATTATTATGAGACGGATGCGGACAGGAGGT
TTTTGGCTGCAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAATTCTCAC
ATCAAGAGAGCAATAATTGACAAAAATGCTCGAATTGGGGATAATGTGAA
GATCGTCAACAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACAGATGGAT
ACTTCATCAAGAGCGGGATTGTCACAATAATCAAGGATGCCTTGATTCCC
AGTGGAACCATAATCTAAACTGTCGTCTTCTCTTCTCAGTTTCATCCCAA
GCTACGGGCACCTTCCCCTCTA
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