CX296540

Overview
NameCX296540
Unique NameCX296540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13299 contig Ccv1_Contig13299:781..1256. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296540 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11
Identity = 41/96 (42.71%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   97 VSWVTFHSAYDFGYLVKILTR-RSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYG--GLDRVARTLDVSRAVGKCHQAGSDSLLTWHAFQKI 375
            ++WV F  +YD  YLVK LT  + LP   +EF   +    G  ++DVK I   C  L    GL R+A  L + R VGK H AGSDS LT   F K+
Sbjct:  135 ITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKR-VGKAHHAGSDSELTARVFTKL 229
The following BLAST results are available for this feature:
BLAST of CX296540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CAF1D_ARATH2.157e-1142.71Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05142H02SK FerrChloL1 Citrus clementina cDNA clone C05142H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296540 ID=CX296540; Name=CX296540; organism=Citrus clementina; type=EST; length=476bp
GATTCGGCCGAGGTTTGATCGCACAGGGAGGAAGGCGTTGACTCGGTTCG
GTTCGCCGAGTTGATGATGTCGTCGGGACTCGTCTGTAACGAGTCGGTGA
GTTGGGTCACGTTCCACAGCGCGTACGATTTCGGGTACCTGGTTAAGATC
CTCACGCGCCGGAGCTTGCCCAGTGGCCTAGACGAGTTTTTGACGGTCCT
CAGGGTGTTTTTCGGTAACAACATTTATGACGTCAAACACATTATGCGGT
TCTGTCAGAGCTTGTACGGTGGGCTGGACCGAGTGGCTCGGACGTTGGAT
GTGAGCCGGGCGGTCGGGAAGTGCCACCAGGCCGGTTCGGATAGCCTTCT
GACCTGGCATGCCTTTCAAAAAATTAGGGATGTGTATTTCGTCCACGACG
GACCGGAGAAACATGCCGGCGTATTATATGGACTAGAAGTGTACTAAATT
TAATTTTGCCCAAGGGGGGGCCCGGT
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