CX296545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11 Identity = 45/136 (33.09%), Postives = 63/136 (46.32%), Query Frame = 1 Query: 112 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 519 +AA+D R +VG L ++ ++ SL FA G + ++++ DR T RSRGFGFVT S +AI +G ++ GR + VN + RGG G Y G G G G RD G G Sbjct: 1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ-SRGGGGGGGG-----------------YGGGRGGGGYGGGRRDGGYGGGG 118
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11 Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 1 Query: 112 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG 381 +AA+D R +VG L ++ + +L + FA G V ++++ DR T RSRGFGFVT S + +AI +G ++ GR + VN + GG Sbjct: 1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGG 90
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: RBPE_ANASP (Putative RNA-binding protein rbpE OS=Anabaena sp. (strain PCC 7120) GN=rbpE PE=3 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11 Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 Query: 139 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 357 +YVGNL YS+T L +VF+E G+V ++ DR T R RGFGFV M S AI+ DG++ GR +KVN Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMGRVLKVN 75
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11 Identity = 45/152 (29.61%), Postives = 70/152 (46.05%), Query Frame = 1 Query: 121 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY------QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG 558 S E +L+VG L ++ +L + F+ G ++ +V DR T RSRGFGF+T + E A +A+R +G + GR ++V+ G R SY QG+ + G G+G RD Q G ++RY+G Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGRS--RDYSGSQGG-------YDRYSG 144
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11 Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 1 Query: 127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 546 E +Y+ N M L E+F+ G S +++ D T RSRGFGFV G+ EEA++A+ +G ++ GR + V + + R GE +++ N YQG +Y NL G+ LR F + SAKV+ E Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE 328
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 118 ASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPH 444 A D + R ++VGN+PY T L ++F+E G+V S +VYDR T + +G+GF E A A+R +G + GR ++V N E ++GP +DSP+ Sbjct: 10 AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP-----IIDSPY 115
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 118 ASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPH 444 A D + R ++VGN+PY T L ++F+E G+V S +VYDR T + +G+GF E A A+R +G + GR ++V N E ++GP +DSP+ Sbjct: 10 AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP-----IIDSPY 115
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: RBPF_ANASP (Putative RNA-binding protein rbpF OS=Anabaena sp. (strain PCC 7120) GN=rbpF PE=3 SV=3) HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11 Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 1 Query: 139 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN--FPEVPR----GGERAAMG 399 +YVGNL Y +T ++ VFAE G+V + DR T R RGF FV MGS E AI DG++ GR +KVN P+ R GG R G Sbjct: 3 IYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGLDGAEWMGRDLKVNKAKPKEDRGSFGGGNRGGYG 95
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11 Identity = 39/123 (31.71%), Postives = 62/123 (50.41%), Query Frame = 1 Query: 121 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 489 SDE +L++G L + SL +VF++ G ++ +V DR T RSRGFGFVT + ++AK+A+ +G + GR ++V+ G R Y+G + G G G +G Sbjct: 2 SDEG-KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKSSGDRR--------GGYRGGSSGGRGFFRGGRGRGGGDRG 115 The following BLAST results are available for this feature:
BLAST of CX296545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296545 ID=CX296545; Name=CX296545; organism=Citrus clementina; type=EST; length=561bpback to top |