CX296545

Overview
NameCX296545
Unique NameCX296545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296545_ssr62 microsatellite CX296545_ssr62:62..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 45/136 (33.09%), Postives = 63/136 (46.32%), Query Frame = 1
Query:  112 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 519
            +AA+D   R +VG L ++ ++ SL   FA  G +  ++++ DR T RSRGFGFVT  S     +AI   +G ++ GR + VN  +  RGG     G                 Y G  G G    G RD   G  G
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ-SRGGGGGGGG-----------------YGGGRGGGGYGGGRRDGGYGGGG 118          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  112 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGG 381
            +AA+D   R +VG L ++  + +L + FA  G V  ++++ DR T RSRGFGFVT  S +   +AI   +G ++ GR + VN  +   GG
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGG 90          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: RBPE_ANASP (Putative RNA-binding protein rbpE OS=Anabaena sp. (strain PCC 7120) GN=rbpE PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  139 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 357
            +YVGNL YS+T   L +VF+E G+V   ++  DR T R RGFGFV M S      AI+  DG++  GR +KVN
Sbjct:    3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMGRVLKVN 75          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 45/152 (29.61%), Postives = 70/152 (46.05%), Query Frame = 1
Query:  121 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY------QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG 558
            S E  +L+VG L ++    +L + F+  G ++   +V DR T RSRGFGF+T  + E A +A+R  +G  + GR ++V+       G R         SY      QG+    +    G  G+G      RD    Q G       ++RY+G
Sbjct:    2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGRS--RDYSGSQGG-------YDRYSG 144          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 1
Query:  127 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 546
            E   +Y+ N    M    L E+F+  G   S +++ D  T RSRGFGFV  G+ EEA++A+   +G ++ GR + V   +  + R GE      +++    N YQG       +Y  NL  G+    LR  F     + SAKV+ E
Sbjct:  189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE 328          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  118 ASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPH 444
            A D + R ++VGN+PY  T   L ++F+E G+V S  +VYDR T + +G+GF      E A  A+R  +G +  GR ++V N        E  ++GP         +DSP+
Sbjct:   10 AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP-----IIDSPY 115          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  118 ASDEAAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV-NFPEVPRGGERAAMGPKLQNSYQGFVDSPH 444
            A D + R ++VGN+PY  T   L ++F+E G+V S  +VYDR T + +G+GF      E A  A+R  +G +  GR ++V N        E  ++GP         +DSP+
Sbjct:   10 AMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP-----IIDSPY 115          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: RBPF_ANASP (Putative RNA-binding protein rbpF OS=Anabaena sp. (strain PCC 7120) GN=rbpF PE=3 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  139 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN--FPEVPR----GGERAAMG 399
            +YVGNL Y +T   ++ VFAE G+V    +  DR T R RGF FV MGS  E   AI   DG++  GR +KVN   P+  R    GG R   G
Sbjct:    3 IYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGLDGAEWMGRDLKVNKAKPKEDRGSFGGGNRGGYG 95          
BLAST of CX296545 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 39/123 (31.71%), Postives = 62/123 (50.41%), Query Frame = 1
Query:  121 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 489
            SDE  +L++G L +     SL +VF++ G ++   +V DR T RSRGFGFVT  + ++AK+A+   +G  + GR ++V+      G  R          Y+G        + G  G G   +G
Sbjct:    2 SDEG-KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKSSGDRR--------GGYRGGSSGGRGFFRGGRGRGGGDRG 115          
The following BLAST results are available for this feature:
BLAST of CX296545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GRPA_MAIZE1.886e-1133.09Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI1.886e-1137.78Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
RBPE_ANASP2.463e-1147.95Putative RNA-binding protein rbpE OS=Anabaena sp. ... [more]
RBM3_MOUSE2.463e-1129.61Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
EPAB_XENTR4.202e-1132.19Embryonic polyadenylate-binding protein OS=Xenopus... [more]
CSTFT_MOUSE7.167e-1134.23Cleavage stimulation factor 64 kDa subunit, tau va... [more]
CSTFT_HUMAN7.167e-1134.23Cleavage stimulation factor 64 kDa subunit, tau va... [more]
RBPF_ANASP9.361e-1144.09Putative RNA-binding protein rbpF OS=Anabaena sp. ... [more]
CIRBB_XENLA9.361e-1131.71Cold-inducible RNA-binding protein B OS=Xenopus la... [more]

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Properties
Property NameValue
Genbank descriptionC05142H09SK FerrChloL1 Citrus clementina cDNA clone C05142H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296545 ID=CX296545; Name=CX296545; organism=Citrus clementina; type=EST; length=561bp
GATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGGCCAAGATGAGCC
AGAAACCGAACAAGAAGAAGAAGAAGAAGAAGAAGCAGTAGAAGAGGAAG
AAGAGCCAAAGGTGGCTGCGTCTGATGAAGCGGCGAGGCTTTACGTAGGG
AATTTGCCTTATTCGATGACTTCTTCTTCGTTAGCTGAGGTTTTTGCGGA
GGCTGGTACCGTGGCTTCAGCTGAGATTGTTTACGATCGAGTTACGGACA
GAAGCAGAGGGTTTGGTTTTGTTACTATGGGGAGTGTGGAAGAAGCTAAA
GAAGCAATTCGTTTATTTGATGGTTCCCAAATTGGTGGCCGAACTGTAAA
GGTGAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGGCAGCAATGGGGC
CAAAATTACAGAACAGTTACCAGGGCTTTGTCGACAGCCCTCACAAGATC
TATGCTGGAAATCTTGGCTGGGGTCTGACTTCTCAGGGTTTAAGAGATGC
TTTTCAGGGCCAGCCAGGTTTATTGAGTGCCAAGGTTATCTTTGAGAGAT
ACACTGGAAGA
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