CX296547

Overview
NameCX296547
Unique NameCX296547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  451 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNL 705
            +P   GE  + C  +  +P VSF +GG  F+L  ++YV++        C+SGF A DV PP GP WILGDVF+G Y  VFD G++
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDM 390          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEY-VLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +GE AV+C NL+ MP+V+FTI G  + L+P  Y +L+  +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN
Sbjct:  312 DGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQF-CSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGN 391          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  451 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGR 675
            +P   GE  + C+ +SS+P V+  +GGK + L+P +Y L+V +     C+SGF   D+ PP GPLWILGDVF+GR
Sbjct:  291 VPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPGGPLWILGDVFIGR 365          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVL-EVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +GE AVDC  L +MPNV+F I    + L P +Y+L ++ +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN
Sbjct:  308 DGEYAVDCATLDTMPNVTFLINEVSYTLNPTDYILPDLVDGMQF-CGSGFQGLDIPPPAGPLWILGDVFIRQFYSVFDRGN 387          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  430 VNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +N+     P  NG+  + C    ++P VSF +GG  F+L   +YV+++ +     C+ GF A D+  P GPLWILGDVF+G Y  VFD G+
Sbjct:  294 LNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGD 384          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  463 NGESAV-DCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            NGE    DC  ++++PNV+ T+ G+ F L P EYVLEV E    +C+SGF   ++    G  WILGDVF+  Y+TVFD+GN
Sbjct:  294 NGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIEL--NMGNFWILGDVFISAYYTVFDFGN 372          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            NGE  V C  ++++PN+ FTI G  + L P+ YVL+  +G    C SGF   D+    G LWILGDVF+ +Y TVFD GN
Sbjct:  302 NGEMVVSCSAINTLPNIVFTINGVQYPLPPSAYVLQSQQG----CTSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRGN 377          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +GE AV+C+NL+ MP+V+F I G  + L+   Y L         C SGF   D+ PP GPLWILGDVF+ ++++VFD G+
Sbjct:  307 DGEYAVECENLNIMPDVTFVINGVPYTLSATAYTLPDFVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRQFYSVFDRGS 386          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +GE  + C ++ S+P++ FTI G  + L+P+ Y+L+  +     C SGF   DV    G LWILGDVF+ +Y+TVFD  N
Sbjct:  301 DGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRAN 376          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 39/57 (68.42%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  535 VFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNL 705
            VF L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL
Sbjct:  205 VFGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNL 257          

HSP 2 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    4 GDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 138
            GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct:  155 GDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 199          
The following BLAST results are available for this feature:
BLAST of CX296547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
NAPSA_HUMAN5.198e-1644.71Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATE_HUMAN5.198e-1650.62Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
CATD_SHEEP6.788e-1646.67Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
CATE_MOUSE2.580e-1549.38Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
NAPSA_MOUSE4.400e-1540.66Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CATD_DICDI7.505e-1548.15Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
PEPA_RHIFE9.802e-1547.50Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
CATE_RABIT2.184e-1446.25Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
PEPA_PIG3.153e-1342.50Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
CARDH_CYNCA3.153e-1368.42Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05146A01SK FerrChloL1 Citrus clementina cDNA clone C05146A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296547 ID=CX296547; Name=CX296547; organism=Citrus clementina; type=EST; length=707bp
GAGGGTGATGTCCTGATTGATGGTGAAACAACTGGATATTGTTCCACTGG
TTGTAACGCAATTGCTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAA
CCATAATTACACAAATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGC
CAAGAATGCAAGACTCTGGTTGACCAATATGGAAAAACCATATTGGAAAT
GCTGATAGCTGAGACACAACCACAAAAGATCTGCTCTCAGATGGGTCTAT
GTACTTTTGATGGGACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATA
GATAAGAGCTCAGACAAGTCATCTGATGGTGTGCATGACTCTGCTATGTG
CTCTGCTTGTGAGATGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAA
ATGAGACAGCAGATCAAATCTTGAATTATGTAAATCAGCTTTGTGACCGT
CTGCCCAGTCCAAATGGAGAATCAGCTGTTGATTGTGACAATTTATCTTC
CATGCCCAATGTTTCATTTACAATTGGTGGCAAAGTATTTGACCTTGCAC
CGAATGAGTATGTTCTTGAAGTGGGAGAGGGAGTTGCAGCCCAATGCATC
AGTGGATTTACTGCTTTCGATGTGGCCCCTCCTCGTGGTCCTCTCTGGAT
TCTGGGAGATGTTTTCATGGGTCGCTATCACACTGTGTTCGACTACGGCA
ACTTGTC
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