CX296547

Overview
NameCX296547
Unique NameCX296547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10351 contig Ccv1_Contig10351:970..1677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    4 GDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGASG 141
            GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+G
Sbjct:  169 GDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGANG 214          

HSP 2 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  538 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNL 705
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL
Sbjct:  222 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNL 273          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +GE  + C ++ S+P++ FTI G  + + P+ Y+L+   G+   C SGF   D++   G LWILGDVF+ +Y TVFD GN
Sbjct:  288 SGEVVISCSSIDSLPDIVFTINGVQYPVPPSAYILQ-SNGI---CSSGFEGMDISTSSGDLWILGDVFIRQYFTVFDRGN 363          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +GE  V C  +SS+P++ FTI G  + + P+ Y+L+        CISGF   DV    G LWILGDVF+ +Y TVFD  N
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGIQYPVPPSAYILQS----QGSCISGFQGMDVPTESGELWILGDVFIRQYFTVFDRAN 379          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            NG+  V C ++ S+P++ FTI G  + L  + Y+L+  +     C SGF   D+  P G LWILGDVF+ +Y  VFD GN
Sbjct:  303 NGQMVVSCSSIQSLPDIVFTINGIQYPLPASAYILQNQQ----DCTSGFQGMDIPTPSGELWILGDVFIRQYFAVFDRGN 378          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +GE  V C  +SS+P++ FTI G  + L P+ Y+L+        C SGF   DV    G LWILGDVF+ +Y TVFD  N
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQS----QGSCTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRAN 379          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +GE  V C  +SS+P++ FTI G  + L P+ Y+L+        C SGF   DV    G LWILGDVF+ +Y TVFD  N
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQS----QGSCTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRAN 379          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  538 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNL 705
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL
Sbjct:  207 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNL 258          

HSP 2 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    4 GDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 138
            GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct:  155 GDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 199          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  538 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNL 705
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL
Sbjct:  165 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNL 216          

HSP 2 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    4 GDVLIDGETTGYCSTGCNAIADSGTSLLAGPTTIITQINHAIGAS 138
            GDVLI  ++TG+C+ GC A ADSGTSLL+GPT I+TQINHAIGA+
Sbjct:  113 GDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGAN 157          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  415 QILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYG 699
            Q+   +N       S NG+  +DC   SS+ +V+FT+ G  F L P +Y+LE     +  C+S F   D+  P GPL ILGD F+ +Y++++D G
Sbjct:  295 QLAEMLNAQIGAKKSWNGQFTIDCGKKSSLEDVTFTLAGYNFTLGPEDYILEA----SGSCLSTFMGMDMPAPVGPLAILGDAFLRKYYSIYDLG 385          
BLAST of CX296547 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  463 NGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGN 702
            +GE  V C  +SS+P++ FTI G  + + P+ Y+L+        C SGF   DV    G LWILGDVF+ +Y TVFD  N
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGIQYPVPPSAYILQS----QGSCTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRAN 379          
The following BLAST results are available for this feature:
BLAST of CX296547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CARDF_CYNCA5.379e-1371.74Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PEPA_BOVIN7.025e-1342.50Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]
PEPA2_MACFU7.025e-1345.00Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
PEPA_SUNMU9.175e-1342.50Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
PEPA_MACMU9.175e-1345.00Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA4_MACFU9.175e-1345.00Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
CARDG_CYNCA9.175e-1367.86Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDE_CYNCA9.175e-1367.86Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARP_NEUCR1.565e-1236.84Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
PEPA1_MACFU2.669e-1243.75Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC05146A01SK FerrChloL1 Citrus clementina cDNA clone C05146A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296547 ID=CX296547; Name=CX296547; organism=Citrus clementina; type=EST; length=707bp
GAGGGTGATGTCCTGATTGATGGTGAAACAACTGGATATTGTTCCACTGG
TTGTAACGCAATTGCTGATTCTGGAACCTCGTTGTTGGCGGGCCCAACAA
CCATAATTACACAAATTAATCATGCCATTGGAGCTTCTGGTGTCATAAGC
CAAGAATGCAAGACTCTGGTTGACCAATATGGAAAAACCATATTGGAAAT
GCTGATAGCTGAGACACAACCACAAAAGATCTGCTCTCAGATGGGTCTAT
GTACTTTTGATGGGACTCGAGGTTTTAGCATGGGAATTGAGAGTGTCATA
GATAAGAGCTCAGACAAGTCATCTGATGGTGTGCATGACTCTGCTATGTG
CTCTGCTTGTGAGATGGCGGTCATATGGATGCAGAACAAGCTGAGGAGAA
ATGAGACAGCAGATCAAATCTTGAATTATGTAAATCAGCTTTGTGACCGT
CTGCCCAGTCCAAATGGAGAATCAGCTGTTGATTGTGACAATTTATCTTC
CATGCCCAATGTTTCATTTACAATTGGTGGCAAAGTATTTGACCTTGCAC
CGAATGAGTATGTTCTTGAAGTGGGAGAGGGAGTTGCAGCCCAATGCATC
AGTGGATTTACTGCTTTCGATGTGGCCCCTCCTCGTGGTCCTCTCTGGAT
TCTGGGAGATGTTTTCATGGGTCGCTATCACACTGTGTTCGACTACGGCA
ACTTGTC
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