CX296550 | Citrus Genome Database

Overview


Name	CX296550
Unique Name	CX296550
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	302

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.491e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.194e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.491e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.194e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.491e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.194e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.253e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 93.5893 bits (231), Expect = 3.367e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.4337 bits (228), Expect = 7.500e-19
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.2781 bits (225), Expect = 1.671e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2

Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

The following BLAST results are available for this feature:

BLAST of CX296550 vs. ExPASy Swiss-Prot

BLAST of CX296550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
UBIQ_AVEFA	2.491e-22	100.00	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	2.491e-22	100.00	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]
UBIQ_ARATH	2.491e-22	100.00	Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=...	[more]
UBL1_ORYSJ	3.253e-22	98.04	Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja...	[more]
UBIQ_XENLA	5.550e-22	98.04	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_TETPY	5.550e-22	98.04	Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ...	[more]
UBIQ_STRPU	5.550e-22	98.04	Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV...	[more]
UBIQ_SPOFR	5.550e-22	98.04	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	5.550e-22	98.04	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]
UBIQ_RABIT	5.550e-22	98.04	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C05146A04SK FerrChloL1 Citrus clementina cDNA clone C05146A04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296550 ID=CX296550; Name=CX296550; organism=Citrus clementina; type=EST; length=302bp
GAGGGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGC
AGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCC
GATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAG
GGGAGGAATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATTACCC
TGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCCAAGATCCAG
GACAAAGAGGGGATTCCTCCGGACCAGCAGAGGCTCATCTTCGCCGGCAA
GC