CX296550

Overview
NameCX296550
Unique NameCX296550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11294 contig Ccv1_Contig11294:305..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 93.5893 bits (231), Expect = 3.367e-19
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.743e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 4.397e-19
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.248e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.6633 bits (226), Expect = 1.279e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.248e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   26 VKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.0485 bits (227), Expect = 9.796e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
UBIQ_CHICK5.550e-2298.04Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA5.550e-2298.04Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO5.550e-2298.04Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA5.550e-2298.04Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR5.550e-2298.04Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_CAEEL5.550e-2298.04Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_BOVIN5.550e-2298.04Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACECL5.550e-2298.04Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYBB7.248e-2298.04Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EUPEU7.248e-2298.04Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05146A04SK FerrChloL1 Citrus clementina cDNA clone C05146A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296550 ID=CX296550; Name=CX296550; organism=Citrus clementina; type=EST; length=302bp
GAGGGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGC
AGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCC
GATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAG
GGGAGGAATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATTACCC
TGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCCAAGATCCAG
GACAAAGAGGGGATTCCTCCGGACCAGCAGAGGCTCATCTTCGCCGGCAA
GC
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