CX296550

Overview
NameCX296550
Unique NameCX296550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11294 contig Ccv1_Contig11294:305..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.761e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            R+K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   25 RIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          

HSP 2 Score: 65.4698 bits (158), Expect = 9.819e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 2
Query:  164 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.370e-12
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 160
            R+K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:   25 RIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77          

HSP 2 Score: 65.4698 bits (158), Expect = 9.819e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 2
Query:  164 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 301
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            R+K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   25 RIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            R+K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   25 RIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            R+K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   25 RIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            R+K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   25 RIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.789e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            R+K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   25 RIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.800e-12
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 160
            R+K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:   25 RIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77          
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.880e-12
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            R+K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   25 RIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.584e-11
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 2
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            R+K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:   25 RIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CX296550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RUB1_ARATH2.761e-1365.38NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RUB2_ARATH1.370e-1262.26NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT1.789e-1261.54NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT1.789e-1261.54NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE1.789e-1261.54NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN1.789e-1261.54NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN1.789e-1261.54NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
NEDD8_DICDI6.800e-1256.60NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
RUB3_ORYSJ8.880e-1259.62NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
UBL1_SCHPO2.584e-1155.77Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionC05146A04SK FerrChloL1 Citrus clementina cDNA clone C05146A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296550 ID=CX296550; Name=CX296550; organism=Citrus clementina; type=EST; length=302bp
GAGGGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGC
AGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCC
GATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAG
GGGAGGAATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATTACCC
TGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCCAAGATCCAG
GACAAAGAGGGGATTCCTCCGGACCAGCAGAGGCTCATCTTCGCCGGCAA
GC
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