CX296550

Overview
NameCX296550
Unique NameCX296550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length302
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11294 contig Ccv1_Contig11294:305..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296550 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.756e-11
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:    2 RVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            R+K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:   25 RIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76
The following BLAST results are available for this feature:
BLAST of CX296550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RUB3_ARATH5.756e-1155.77NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC05146A04SK FerrChloL1 Citrus clementina cDNA clone C05146A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296550 ID=CX296550; Name=CX296550; organism=Citrus clementina; type=EST; length=302bp
GAGGGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGC
AGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCC
GATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAG
GGGAGGAATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATTACCC
TGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCCAAGATCCAG
GACAAAGAGGGGATTCCTCCGGACCAGCAGAGGCTCATCTTCGCCGGCAA
GC
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