CX296553

Overview
NameCX296553
Unique NameCX296553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_BACC1 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC 10987) GN=menE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.086e-13
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 3
Query:   96 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            T GEIV++G  V  GY     A  E   NGW H+GD+     + ++ + DR  D+IISGGENI   ++E+VL  HP
Sbjct:  329 TEGEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHP 404          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_LISMO (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes GN=menE PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 36/93 (38.71%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   39 DGLDVIDARTNQPVPADGKTI--GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 311
            D L+ I +      PA+ K    GEI+++G  +  GYL N KA E +F +GWF +GD+     + ++ + +R  D+IISGGENI   E+E V+
Sbjct:  295 DALNKIGSSGKALFPAEVKIADDGEILLKGPSITPGYLHNKKATEASFVDGWFKTGDIGYLDEEGFLFVVERRSDLIISGGENIYPTEIEHVI 387          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_LISMF (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=menE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 36/93 (38.71%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   39 DGLDVIDARTNQPVPADGKTI--GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 311
            D L+ I +      PA+ K    GEI+++G  +  GYL N KA E +F +GWF +GD+     + ++ + +R  D+IISGGENI   E+E V+
Sbjct:  295 DALNKIGSSGKALFPAEVKIADDGEILLKGPSITPGYLHNKKATEASFVDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVI 387          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.379e-12
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            GE+ +RG  VM GY + P A +E   NGW H+GD+AV   + ++ I DR KD+I+  G N+   E+E V+  HP
Sbjct:  405 GELCVRGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHP 478          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_LISIN (2-succinylbenzoate--CoA ligase OS=Listeria innocua GN=menE PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.801e-12
Identity = 36/93 (38.71%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   39 DGLDVIDARTNQPVPADGKTI--GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 311
            D L+ I +      PA+ K    GEI+++G  +  GYL N KA  +AF +GWF +GD+     + ++ + +R  D+IISGGENI   E+E V+
Sbjct:  295 DALNKIGSSGKALFPAEVKIADDGEILLKGPSITPGYLHNEKATAKAFIDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVI 387          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.073e-12
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            GE+ ++G  VM GY + P A +E   NGW H+GD+AV   + ++ I DR KD+I+  G N+   E+E V+  HP
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHP 478          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.073e-12
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            GE+ ++G  VM GY + P A +E   NGW H+GD+AV   + ++ I DR KD+I+  G N+   E+E V+  HP
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHP 478          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.241e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 3
Query:   51 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 320
            ++D   N+  P +    GE+ ++G  VM GY + P A +E   +GW H+GD+AV   D ++ I DR KD+I+  G N+   E+E V+  H
Sbjct:  391 LVDDDDNEVAPGEA---GELCVKGPQVMLGYWQRPDATDEIIKDGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQH 477          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.241e-12
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 3
Query:   51 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 320
            ++D   N+  P +    GE+ ++G  VM GY + P A +E   +GW H+GD+AV   D ++ I DR KD+I+  G N+   E+E V+  H
Sbjct:  391 LVDDDDNEVAPGEA---GELCVKGPQVMLGYWQRPDATDEIIKDGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQH 477          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: FADK_ECOLI (Short-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadK PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.241e-12
Identity = 44/108 (40.74%), Postives = 54/108 (50.00%), Query Frame = 3
Query:    3 GHARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            G+A  GV    +D     DAR   P   +G    E   RG  V  GY   P+    A    GW++SGDL       YI+I  R KD+I+ GGENISS EVE +L  HP
Sbjct:  359 GYAAAGVEIKVVD-----DARKTLPPGCEG----EEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHP 457          
The following BLAST results are available for this feature:
BLAST of CX296553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
MENE_BACC18.086e-1343.422-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_LISMO1.056e-1238.712-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
MENE_LISMF1.056e-1238.712-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
LCFA_ECO571.379e-1243.24Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
MENE_LISIN1.801e-1238.712-succinylbenzoate--CoA ligase OS=Listeria innocua... [more]
LCFA_ECOLI3.073e-1241.89Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL63.073e-1241.89Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_SALTY5.241e-1236.67Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI5.241e-1236.67Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
FADK_ECOLI5.241e-1240.74Short-chain-fatty-acid--CoA ligase OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionC05146A09SK FerrChloL1 Citrus clementina cDNA clone C05146A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296553 ID=CX296553; Name=CX296553; organism=Citrus clementina; type=EST; length=327bp
GAGGTCATGCCCGTCAAGGGGTCAGGACTATTTGCCTGGATGGCTTAGAT
GTTATCGACGCGAGAACAAACCAACCGGTTCCTGCTGATGGGAAAACAAT
TGGAGAGATAGTGATGCGTGGCAGTTGTGTGATGAAGGGTTACCTAAAGA
ACCCTAAAGCCAACGAGGAAGCTTTTGCAAACGGGTGGTTTCATTCTGGG
GATCTTGCTGTGAAGCATCCGGATAATTATATCGAAATTAAAGACAGATT
AAAGGATGTAATTATCTCTGGAGGTGAAAATATTAGCAGTGTTGAAGTAG
AGAAAGTGCTGTACTTGCATCCATTAG
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