CX296553

Overview
NameCX296553
Unique NameCX296553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_BACP2 (2-succinylbenzoate--CoA ligase OS=Bacillus pumilus (strain SAFR-032) GN=menE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.845e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 320
            GEI+++G+ VMKGYL   ++   AF  GW  +GD+     + ++ + DR  D+IISGGENI   E+E VL  H
Sbjct:  333 GEIMVKGANVMKGYLYREESTAAAFDQGWLKTGDIGYVDEEGFLFVLDRRSDLIISGGENIYPAEIEAVLLTH 405          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: ENTE_ECOLI (Enterobactin synthase component E OS=Escherichia coli (strain K12) GN=entE PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.940e-12
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   39 DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            D + V DA  N P+P     +G ++ RG    +GY K+P+ N  AF ANG++ SGDL    P+ YI ++ R KD I  GGE I++ E+E +L  HP
Sbjct:  363 DEVWVADAEGN-PLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHP 455          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: ENTE_ECO57 (Enterobactin synthase component E OS=Escherichia coli O157:H7 GN=entE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.940e-12
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 3
Query:   39 DGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            D + V DA  N P+P     +G ++ RG    +GY K+P+ N  AF ANG++ SGDL    P+ YI ++ R KD I  GGE I++ E+E +L  HP
Sbjct:  363 DEVWVADAEGN-PLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHP 455          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 3
Query:   45 LDVIDARTNQPVPADGKTI-GEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            L +ID  T + +   G+ + GEI +RG  +MKGYL NP+A +    A GW H+GD+     D+ I I DRLK++I   G  ++  E+E +L  HP
Sbjct:  389 LKIIDPDTGKSL---GRNLPGEICIRGQQIMKGYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITHP 480          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.525e-11
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 3
Query:   78 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            +P DG++ G ++ RG  V+K Y  +   +    ++GWF +GD+A    D ++ I DR KD+I SGGE IS+VE+E +   HP
Sbjct:  378 LPEDGRSKGNLMARGHWVIKDYFHSDPGS--TLSDGWFSTGDVATIDSDGFMTICDRAKDIIKSGGEWISTVELESIAIAHP 457          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.601e-11
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 3
Query:  102 GEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 320
            GEI+++G  VMKGY   P+       +GW  +GD+     + +  I DR KD+II+GG NI   EVE+ LY H
Sbjct:  404 GEIIVKGPQVMKGYWNKPEETAAVLRDGWLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEH 476          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: ACSF2_PONAB (Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.601e-11
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 3
Query:   84 ADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            A+  T GE+ +RG CVM GY   P+  EEA   + W+ +GD+A  +   + +I  R KD+II GGENI   E+E   + HP
Sbjct:  453 AELNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYRTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHP 533          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: ACSF2_DANRE (Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.601e-11
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   51 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG-WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            V+D  T + VP   +  GE+++RG CVM  Y ++ +   E      W+ +GD+A      Y +I+ R+KD+II GGENI   E+E+ L+ HP
Sbjct:  435 VVDPTTGEIVPLGAQ--GELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIASLDQFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHP 524          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: ACSF2_BOVIN (Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.601e-11
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 3
Query:   96 TIGEIVMRGSCVMKGYLKNPKANEEAFANG-WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            T GE+ +RG CVM GY   P+  EEA     W+ +GD+A+     + +I  R KD+II GGENI   E+E   + HP
Sbjct:  457 TPGELCIRGYCVMLGYWGEPQKTEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHP 533          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: YDAB_BACSU (Putative acyl--CoA ligase ydaB OS=Bacillus subtilis GN=ydaB PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.437e-11
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 3
Query:   51 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            V D  T + +P     IGEIV+    + KGY  NP+A  +   NGWF +GD      D +I I  R KDVII GG+N+   +VE+V+   P
Sbjct:  337 VEDPLTGEELPQG--EIGEIVVHTPFLFKGYEDNPEATAKVLQNGWFRTGDSGYVDEDGFIFITGRYKDVIIYGGDNVYPDQVEEVIQQIP 425          
The following BLAST results are available for this feature:
BLAST of CX296553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
MENE_BACP26.845e-1243.842-succinylbenzoate--CoA ligase OS=Bacillus pumilus... [more]
ENTE_ECOLI8.940e-1241.67Enterobactin synthase component E OS=Escherichia c... [more]
ENTE_ECO578.940e-1241.67Enterobactin synthase component E OS=Escherichia c... [more]
4CL1_ORYSJ1.168e-1140.00Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
ALKK_PSEOL1.525e-1140.24Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas... [more]
LCFA_BACSU2.601e-1142.47Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
ACSF2_PONAB2.601e-1141.98Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_DANRE2.601e-1138.04Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_BOVIN2.601e-1142.86Acyl-CoA synthetase family member 2, mitochondrial... [more]
YDAB_BACSU4.437e-1140.66Putative acyl--CoA ligase ydaB OS=Bacillus subtili... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05146A09SK FerrChloL1 Citrus clementina cDNA clone C05146A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296553 ID=CX296553; Name=CX296553; organism=Citrus clementina; type=EST; length=327bp
GAGGTCATGCCCGTCAAGGGGTCAGGACTATTTGCCTGGATGGCTTAGAT
GTTATCGACGCGAGAACAAACCAACCGGTTCCTGCTGATGGGAAAACAAT
TGGAGAGATAGTGATGCGTGGCAGTTGTGTGATGAAGGGTTACCTAAAGA
ACCCTAAAGCCAACGAGGAAGCTTTTGCAAACGGGTGGTTTCATTCTGGG
GATCTTGCTGTGAAGCATCCGGATAATTATATCGAAATTAAAGACAGATT
AAAGGATGTAATTATCTCTGGAGGTGAAAATATTAGCAGTGTTGAAGTAG
AGAAAGTGCTGTACTTGCATCCATTAG
back to top