CX296553

Overview
NameCX296553
Unique NameCX296553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: FAT2_YEAST (Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae GN=FAT2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.437e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3
Query:   42 GLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN--GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            G+ V+    N  V   GK +GE+ +RG  V  GY  NPKAN+E F     +F +GD     P+ ++ +  R+K++I  GGE IS +E++ ++  HP
Sbjct:  363 GVTVVILDDNDNVLPPGK-VGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHP 457          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.437e-11
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 3
Query:   45 LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 320
            L ++D  T   +P +    GEI +RG  +MKGYL NP+A E+    +GW H+GD+     D+ I I DRLK++I   G  ++  E+E +L  H
Sbjct:  365 LKIVDPDTGLSLPRNQP--GEICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYKGFQVAPAELEAMLIAH 455          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.437e-11
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 3
Query:   45 LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            + ++D  TN  +P + +  GEI +RG  +MKGYL +P++        GW H+GD+     D+ + I DRLK++I   G  ++  E+E +L  HP
Sbjct:  370 MKIVDPETNASLPRNQR--GEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHP 461          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.437e-11
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 3
Query:   45 LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            + ++D  TN  +P + +  GEI +RG  +MKGYL +P++        GW H+GD+     D+ + I DRLK++I   G  ++  E+E +L  HP
Sbjct:  370 MKIVDPETNASLPRNQR--GEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHP 461          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: MENE_ENTFA (2-succinylbenzoate--CoA ligase OS=Enterococcus faecalis GN=menE PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.795e-11
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 3
Query:   93 KTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL 311
            K +GEI+++G  V+ GYL N +  E+  A+GWF +GD+      +Y+ +  RL ++IISGGENI   EVE+VL
Sbjct:  329 KQVGEILLKGPNVVSGYL-NQRQPEKWTADGWFKTGDMGYLDAQSYLYLVSRLSELIISGGENIYPTEVEQVL 400          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: FAT2_SCHPO (Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe GN=SPCC1827.03c PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.568e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 3
Query:   45 LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG-WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            L ++D + N+     GK  GEI +RG  V KGYL NP AN+ +F    +F +GD      D Y+ I  R+K+++  GGE IS  E++ VL  HP
Sbjct:  338 LKILDQKGNEM--PQGKE-GEICVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIKELVNRGGEKISPAEIDAVLMQHP 428          
BLAST of CX296553 vs. ExPASy Swiss-Prot
Match: ACSF2_HUMAN (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.568e-11
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 3
Query:   96 TIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 323
            T GE+ +RG CVM GY   P+  EEA   + W+ +GD+A  +   + +I  R KD+II GGENI   E+E   + HP
Sbjct:  457 TPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHP 533          
The following BLAST results are available for this feature:
BLAST of CX296553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
FAT2_YEAST4.437e-1136.46Peroxisomal-coenzyme A synthetase OS=Saccharomyces... [more]
4CL5_ORYSJ4.437e-1138.71Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL2_PETCR4.437e-1135.114-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_PETCR4.437e-1135.114-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
MENE_ENTFA5.795e-1145.212-succinylbenzoate--CoA ligase OS=Enterococcus fae... [more]
FAT2_SCHPO7.568e-1140.43Putative peroxisomal-coenzyme A synthetase OS=Schi... [more]
ACSF2_HUMAN7.568e-1142.86Acyl-CoA synthetase family member 2, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionC05146A09SK FerrChloL1 Citrus clementina cDNA clone C05146A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296553 ID=CX296553; Name=CX296553; organism=Citrus clementina; type=EST; length=327bp
GAGGTCATGCCCGTCAAGGGGTCAGGACTATTTGCCTGGATGGCTTAGAT
GTTATCGACGCGAGAACAAACCAACCGGTTCCTGCTGATGGGAAAACAAT
TGGAGAGATAGTGATGCGTGGCAGTTGTGTGATGAAGGGTTACCTAAAGA
ACCCTAAAGCCAACGAGGAAGCTTTTGCAAACGGGTGGTTTCATTCTGGG
GATCTTGCTGTGAAGCATCCGGATAATTATATCGAAATTAAAGACAGATT
AAAGGATGTAATTATCTCTGGAGGTGAAAATATTAGCAGTGTTGAAGTAG
AGAAAGTGCTGTACTTGCATCCATTAG
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