CX296561

Overview
NameCX296561
Unique NameCX296561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_CHLAA (Methylthioribose-1-phosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.308e-26
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRPF QG+RLTA+EL+   IP           +M+ G++  VIVGADR+AANGD  NKIGTY LA+ A++HNI FYVAAP ++IDL  +SG +I IEER   E+
Sbjct:  187 FVDETRPFLQGARLTAWELLQAGIPQTLITDNMAAFMMQRGQIDCVIVGADRIAANGDVANKIGTYGLAVLARYHNIPFYVAAPSSTIDLATASGADIPIEERDPAEV 294          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_ALHEH (Methylthioribose-1-phosphate isomerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.308e-26
Identity = 63/109 (57.80%), Postives = 72/109 (66.06%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 332
            Y  ETRP+ QG+RLTA+ELV D IP           LM+ GRV  VIVGADRVAANGDT NKIGTY+LAL  K H + F V AP ++IDL    G  I IEER  +ELL
Sbjct:  187 YADETRPWLQGARLTAWELVADGIPVRLIAEGAAPLLMQRGRVDWVIVGADRVAANGDTANKIGTYALALACKAHGVKFMVVAPSSTIDLDCPGGDRIPIEERPPEELL 295          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_THEEB (Methylthioribose-1-phosphate isomerase OS=Thermosynechococcus elongatus (strain BP-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.238e-26
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            Y  ETRP  QG++LTA+E V + IP            M+ G + AV+VGADR+A NGDT NKIGTYS+AL AK HNI F+VAAPL++ID ++++G EI IEER  +E+
Sbjct:  196 YADETRPRLQGAKLTAWECVQEGIPVTLIADTMAAHCMQRGMIDAVVVGADRIALNGDTANKIGTYSVALAAKAHNIPFFVAAPLSTIDTSIATGAEIPIEERHPQEI 303          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_RHOFD (Methylthioribose-1-phosphate isomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 3
Query:   15 ETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            ETRPF QG+RLTA+E+V + IP           LM  G V A++VG DRVAANGD  NKIGTY +A+ A+ HNI FYVA PL++IDL +  G  I IEER+A+E+
Sbjct:  198 ETRPFLQGARLTAWEMVQENIPVTLITDNMAGHLMSRGEVDAIVVGTDRVAANGDVANKIGTYMVAVLAQRHNIPFYVACPLSTIDLAIPDGAAIPIEERAAEEV 302          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_CARHZ (Methylthioribose-1-phosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.076e-25
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRP  QG+RLTAFEL+ D I            +M  G V  V+VGADRV ANGD  NKIGTYSLA+ AK H I FYVAAP ++IDL L+SGQ+I IEER+  E+
Sbjct:  183 FADETRPLLQGARLTAFELLEDGIDVTLICDNMAGYVMSLGLVDLVVVGADRVTANGDVANKIGTYSLAILAKEHGIPFYVAAPYSTIDLNLTSGQDIPIEERNPDEV 290          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_PERMH (Methylthioribose-1-phosphate isomerase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.405e-25
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            Y  ETRP+ QGSRLTA+ELV + IP           LM  G + A+IVGADR+ ANGD  NKIGTY+LA+ A+ H I FYVAAP ++ DL   SG++I IEERS  E+
Sbjct:  191 YVDETRPYLQGSRLTAWELVEEGIPHYLITDNSAGFLMSKGIIDAIIVGADRITANGDVANKIGTYTLAVLAEAHGIPFYVAAPTSTFDLDTDSGKDIPIEERSQLEV 298          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_NOSP7 (Methylthioribose-1-phosphate isomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.405e-25
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRP  QG++LTA+E V + IP            MK G + AV+VGADR+AANGDT NKIGTYS+A+ AK HNI F+VAAPL+++D  L+ G +I IEER   E+
Sbjct:  194 FADETRPRLQGAKLTAWECVQEGIPVTLITDNMAAHCMKQGLIHAVVVGADRIAANGDTANKIGTYSVAIAAKAHNIPFFVAAPLSTVDFELADGSKIPIEERDPTEI 301          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_GEOBB (Methylthioribose-1-phosphate isomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.405e-25
Identity = 57/108 (52.78%), Postives = 79/108 (73.15%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRP+ QG+RLTA+EL+ D IP           LMK G++   +VGADR+AANGDT NKIGTYS+A+ AK + I FYVAAP++++DL L++G  I IEER+++E+
Sbjct:  187 FADETRPWLQGARLTAWELMKDSIPVTLISDNMAGWLMKTGQIDFCVVGADRIAANGDTANKIGTYSVAVLAKENRIPFYVAAPISTLDLKLANGDLIPIEERASEEV 294          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_GLOVI (Methylthioribose-1-phosphate isomerase OS=Gloeobacter violaceus GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.835e-25
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            Y  ETRP  QG+RLTA+ELVH+RIP           ++  G V AV+VGADR+AANGDT NKIGT  +A+ A+ + + F+VAAP +++DL LSSG++I IE+R ++E+
Sbjct:  188 YADETRPRLQGARLTAWELVHERIPVTVLADTMAAHVIGRGLVDAVVVGADRIAANGDTANKIGTCGVAIIARHYGVPFFVAAPWSTVDLNLSSGEQIPIEQRDSEEM 295          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_GEOUR (Methylthioribose-1-phosphate isomerase OS=Geobacter uraniireducens (strain Rf4) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.835e-25
Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRP+ QG+RLT++EL+ D IP            M+ G +   +VGADR+AANGDT NKIGTYS+A+ AK + I FYVAAP++++DL+L SG++I IEER ++E+
Sbjct:  187 FADETRPWLQGARLTSWELMKDGIPVTLISDNMAGYFMRKGEIDVCVVGADRIAANGDTANKIGTYSVAVLAKENKIPFYVAAPVSTLDLSLKSGEDIPIEERHSREV 294          
The following BLAST results are available for this feature:
BLAST of CX296561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_CHLAA6.308e-2653.70Methylthioribose-1-phosphate isomerase OS=Chlorofl... [more]
MTNA_ALHEH6.308e-2657.80Methylthioribose-1-phosphate isomerase OS=Alkalili... [more]
MTNA_THEEB8.238e-2653.70Methylthioribose-1-phosphate isomerase OS=Thermosy... [more]
MTNA_RHOFD1.076e-2555.24Methylthioribose-1-phosphate isomerase OS=Rhodofer... [more]
MTNA_CARHZ1.076e-2556.48Methylthioribose-1-phosphate isomerase OS=Carboxyd... [more]
MTNA_PERMH1.405e-2554.63Methylthioribose-1-phosphate isomerase OS=Persepho... [more]
MTNA_NOSP71.405e-2552.78Methylthioribose-1-phosphate isomerase OS=Nostoc p... [more]
MTNA_GEOBB1.405e-2552.78Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_GLOVI1.835e-2551.85Methylthioribose-1-phosphate isomerase OS=Gloeobac... [more]
MTNA_GEOUR1.835e-2550.93Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]

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Properties
Property NameValue
Genbank descriptionC05146B05SK FerrChloL1 Citrus clementina cDNA clone C05146B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296561 ID=CX296561; Name=CX296561; organism=Citrus clementina; type=EST; length=335bp
GAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCACT
GCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACTC
TGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCG
GAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAACC
TACAGCCTTGCATTATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGC
TGCTCCACTGACGTCAATTGATTTAACCCTTTCTTCTGGACAAGAGATTG
TCATAGAGGAGAGGTCTGCTAAAGAATTGTTGTGC
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