CX296561

Overview
NameCX296561
Unique NameCX296561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_THETN (Methylthioribose-1-phosphate isomerase OS=Thermoanaerobacter tengcongensis GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.397e-25
Identity = 54/108 (50.00%), Postives = 76/108 (70.37%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            Y  ETRP  QG++LTA+ELV + IP           L++DG++  ++VGADR+A NGDT NKIGT+ L++ AK +N+ FYV AP ++ID  + +G EIVIEERS +E+
Sbjct:  188 YADETRPRLQGAKLTAWELVQEGIPAKLIADSVAATLIRDGKIDIILVGADRIALNGDTANKIGTFMLSVVAKVYNVPFYVVAPTSTIDFNIETGAEIVIEERSPEEV 295          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_THISH (Methylthioribose-1-phosphate isomerase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=mtnA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.131e-25
Identity = 58/109 (53.21%), Postives = 72/109 (66.06%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 332
            Y  ETRP+ QG+RLTA+ELV D IP           LM+ GRV  V+VGADR+AANGDT NKIGTY+LA+ A+ H + F V AP ++ID+    G  I IEER   E+L
Sbjct:  190 YADETRPWLQGARLTAWELVQDGIPVDLICEGAAASLMRSGRVGWVVVGADRIAANGDTANKIGTYALAVLARHHGVRFMVVAPTSTIDMDTPDGAGIPIEERPVSEVL 298          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSM (Methylthioribose-1-phosphate isomerase OS=Geobacter sp. (strain M21) GN=mtnA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.131e-25
Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRP+ QG+RLTA+EL+ D IP           LM+ G++   +VGADR+AANGDT NKIGTYS+A+ AK + I FYVAAP++++DL L++G  I IEER+++E+
Sbjct:  187 FADETRPWLQGARLTAWELMKDSIPVTLISDNMAGWLMRTGQIDFCVVGADRIAANGDTANKIGTYSVAVLAKENRIPFYVAAPISTLDLKLANGDLIPIEERASEEV 294          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_PSEU5 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=mtnA PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.089e-25
Identity = 58/109 (53.21%), Postives = 72/109 (66.06%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 332
            Y  ETRP+ QGSRLTA+EL+ D +P           LMK   +S VIVGADR+ ANGD  NKIGTY LA+ A  H + F V AP ++ID+ L SG EI++EER+  ELL
Sbjct:  196 YVDETRPWLQGSRLTAWELLGDGVPATLNVDSAAAHLMKSRGISWVIVGADRITANGDVANKIGTYQLAVLAMHHGVRFMVVAPSSTIDMALESGDEILLEERAGSELL 304          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_DESVM (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=mtnA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.089e-25
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   12 SETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +ETRPF QG+RLTA+EL  D IP           LM+ G V  V+VGADR+AANGD  NKIGTYS+AL A+ H + FYVAAPL++ID     G  I IE+R+ +E+
Sbjct:  189 NETRPFLQGARLTAYELHEDHIPVTVACDNACGHLMRKGMVQKVVVGADRIAANGDAANKIGTYSVALLAREHGVPFYVAAPLSTIDRNTPDGDHIPIEDRTPREV 294          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_HELMI (Methylthioribose-1-phosphate isomerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.340e-25
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRP  QG+RLTA+EL+ D IP           +MK   V  VIVGADR+ ANGD  NKIGTY +AL AK H I FYVAAP+++ DL+L SG +I IEER  +E+
Sbjct:  185 FADETRPLLQGARLTAWELMQDGIPVTLITDSMAAYVMKQKLVDLVIVGADRITANGDVANKIGTYGVALAAKAHGIPFYVAAPVSTFDLSLESGLQIPIEERDTEEV 292          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_CHLTE (Methylthioribose-1-phosphate isomerase OS=Chlorobium tepidum GN=mtnA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.340e-25
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = 3
Query:   12 SETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            SE+RP  QG RLTA+EL HD IP           LM+ G +   I GADR+ ANGDT NKIGTY+ A+ A++H + FY+AAP+++ID+T++ G EI IEER+  EL
Sbjct:  197 SESRPLLQGLRLTAWELEHDGIPFASISDSSSAILMQRGMIDFAITGADRITANGDTANKIGTYAHAISARYHGLPFYIAAPVSTIDITMAEGSEIPIEERNPDEL 302          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_DESVV (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=mtnA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.974e-25
Identity = 60/106 (56.60%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   12 SETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +ETRPF QG+RLTAFEL  D IP           LMK G V  V+VGADR+AANGD  NKIGTYS+AL A+ H I FYVAAPL++ID     G  I IE R+  E+
Sbjct:  190 NETRPFLQGARLTAFELHEDGIPVTVACDNACGLLMKRGMVQKVVVGADRIAANGDAANKIGTYSVALLAREHGIPFYVAAPLSTIDRETPDGDHIPIENRTPTEV 295          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_DESVH (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=mtnA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.974e-25
Identity = 60/106 (56.60%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   12 SETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +ETRPF QG+RLTAFEL  D IP           LMK G V  V+VGADR+AANGD  NKIGTYS+AL A+ H I FYVAAPL++ID     G  I IE R+  E+
Sbjct:  190 NETRPFLQGARLTAFELHEDGIPVTVACDNACGLLMKRGMVQKVVVGADRIAANGDAANKIGTYSVALLAREHGIPFYVAAPLSTIDRETPDGDHIPIENRTPTEV 295          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_ANADF (Methylthioribose-1-phosphate isomerase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=mtnA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.974e-25
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 332
            +  ETRPF QG+RLTA+EL  D IP           LM  G ++ V+VGADR+AANGD  NKIGTY+LA+ A +H++ FYVAAP +++DL    G  I IEER  +E++
Sbjct:  178 FADETRPFLQGARLTAWELKRDGIPVTLLTDNMAGWLMAQGEIACVVVGADRIAANGDVANKIGTYALAVLAAYHHLPFYVAAPWSTVDLATPDGSAIPIEERGDEEVV 286          
The following BLAST results are available for this feature:
BLAST of CX296561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_THETN2.397e-2550.00Methylthioribose-1-phosphate isomerase OS=Thermoan... [more]
MTNA_THISH3.131e-2553.21Methylthioribose-1-phosphate isomerase OS=Thioalka... [more]
MTNA_GEOSM3.131e-2551.85Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_PSEU54.089e-2553.21Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_DESVM4.089e-2553.77Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_HELMI5.340e-2553.70Methylthioribose-1-phosphate isomerase OS=Heliobac... [more]
MTNA_CHLTE5.340e-2551.89Methylthioribose-1-phosphate isomerase OS=Chlorobi... [more]
MTNA_DESVV6.974e-2556.60Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_DESVH6.974e-2556.60Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_ANADF6.974e-2550.46Methylthioribose-1-phosphate isomerase OS=Anaeromy... [more]

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Properties
Property NameValue
Genbank descriptionC05146B05SK FerrChloL1 Citrus clementina cDNA clone C05146B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296561 ID=CX296561; Name=CX296561; organism=Citrus clementina; type=EST; length=335bp
GAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCACT
GCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACTC
TGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCG
GAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAACC
TACAGCCTTGCATTATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGC
TGCTCCACTGACGTCAATTGATTTAACCCTTTCTTCTGGACAAGAGATTG
TCATAGAGGAGAGGTCTGCTAAAGAATTGTTGTGC
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