CX296561

Overview
NameCX296561
Unique NameCX296561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_PSE14 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.029e-24
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 332
            Y  ETRP+ QGSRLTA+EL ++ IP           LM+   ++ VIVGADR+ ANGD  NKIGTY LA+ A  H + F V AP ++ID+ ++SG +I+IEER  +ELL
Sbjct:  196 YADETRPWLQGSRLTAWELANEGIPVTLNADSAAAHLMRTKGITWVIVGADRITANGDVANKIGTYQLAVAAMHHGVRFMVVAPSSTIDMEMASGDDIIIEERDGRELL 304          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_ANADE (Methylthioribose-1-phosphate isomerase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.029e-24
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 332
            +  ETRPF QG+RLTA+EL  D IP           LM  G +  V+VGADR+AANGD  NKIGTY+LA+ A  H + FYVAAP +++DL   +G +I IEER++ E++
Sbjct:  179 FADETRPFLQGARLTAWELHRDGIPVTVLTDGMAGWLMARGEIGCVVVGADRIAANGDVANKIGTYALAVLAAHHRLPFYVAAPWSTVDLATPTGADIPIEERASDEVV 287          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_MICAE (Methylthioribose-1-phosphate isomerase OS=Microcystis aeruginosa GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.650e-24
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            Y  ETRP  QG++LTA+E   + IP            M+   + AVIVGADR+AANGDT NKIGTYSLA+ AK HN+ FYVAAPL+++D +L  G  I IE+R + E+
Sbjct:  197 YADETRPRLQGAKLTAWECAREGIPVTVITDSMAAHCMQQKLIDAVIVGADRIAANGDTANKIGTYSLAVVAKAHNLPFYVAAPLSTVDFSLKDGTGIPIEQRDSAEI 304          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA2_THELT (Methylthioribose-1-phosphate isomerase 2 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.650e-24
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLC 335
            +  ETRP  QG+RL+A+E+    IP           +MK  ++   +VGADR+AANGDT NKIGTY+LA+ AK+HN+  YV AP ++IDL   +GQ+I IEERSA E+ C
Sbjct:  185 FLDETRPRLQGARLSAWEMKELGIPHTIIVDGASGLVMKKFKIDLALVGADRIAANGDTANKIGTYNLAIVAKYHNVPLYVVAPTSTIDLKTPAGQDIPIEERSADEIRC 294          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: YQJQ_CAEEL (Uncharacterized protein C01G10.9 OS=Caenorhabditis elegans GN=C01G10.9 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.461e-24
Identity = 54/109 (49.54%), Postives = 70/109 (64.22%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 332
            Y  ETRP+NQG RLT+ EL+H  +P            MK+ +V  V+ GAD VA NGDT NKIGTY LA+  K HNI FY   P T+I+  +++G+EI IEER + E+L
Sbjct:  210 YVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVLTGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEML 318          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_THEM4 (Methylthioribose-1-phosphate isomerase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.461e-24
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRP+ QG+RLTA+EL+ D I             MK G+++AVIVGADRVA+NGD  NKIGTY +A+ AK H I FYVAAP ++IDL   +G++I IEER   E+
Sbjct:  187 FADETRPYLQGARLTAWELMKDGIDVTLISDNMSGWAMKLGKINAVIVGADRVASNGDVANKIGTYMVAVLAKRHGIPFYVAAPTSTIDLNTQTGKDIPIEERKHTEV 294          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_MICAN (Methylthioribose-1-phosphate isomerase OS=Microcystis aeruginosa (strain NIES-843) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.461e-24
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            Y  ETRP  QG++LTA+E + + IP            M+   + AVIVGADR+AANGDT NKIGTYSLA+ AK HN+ FYVAAPL+++D +L  G  I IE+R   E+
Sbjct:  197 YADETRPRLQGAKLTAWECLREGIPVTVITDSMAAHCMQQKLIDAVIVGADRIAANGDTANKIGTYSLAVVAKAHNLPFYVAAPLSTVDFSLKDGTGIPIEQRDRAEI 304          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_NITOC (Methylthioribose-1-phosphate isomerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=mtnA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.521e-24
Identity = 55/109 (50.46%), Postives = 72/109 (66.06%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 332
            +  ETRP+ QG+RLT +EL+ D IP           L+  G V  VIVGADR+AANGDT NKIG+Y LA+ A++HN+ F V AP ++ID  LS G  I IE+R  +E+L
Sbjct:  190 FADETRPWLQGARLTTWELLRDGIPVVLIADSVAPYLLGQGEVQWVIVGADRIAANGDTANKIGSYGLAVAARYHNVRFMVVAPTSTIDWNLSDGTRIPIEQRPPEEVL 298          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_ENTS8 (Methylthioribose-1-phosphate isomerase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mtnA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.521e-24
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 329
            +  ETRP  QG RLTA+EL    +P           LM  G+V AV VGADR+AANGD  NKIGTYSLA+ AKFHN+ FYVAAP T++D    +G  I IE+R+A E+
Sbjct:  178 WVDETRPLLQGGRLTAWELGELGVPYQLITDSMAASLMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAKFHNVPFYVAAPQTTLDPACPNGAAIPIEQRAAAEV 285          
BLAST of CX296561 vs. ExPASy Swiss-Prot
Match: MTNA_PSEPW (Methylthioribose-1-phosphate isomerase OS=Pseudomonas putida (strain W619) GN=mtnA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.904e-24
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 3
Query:    6 YCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELL 332
            Y  ETRP+ QGSRLTA+EL ++ IP           LMK   ++ V+VGAD +AANGD  +KIGTY LA+ A  H + F V AP TSIDL L++G++I +EER A ELL
Sbjct:  196 YAGETRPWLQGSRLTAWELANEGIPVTLCADSALAHLMKSKGITWVVVGADCIAANGDVASKIGTYQLAVNAMHHGVRFMVVAPSTSIDLNLATGEDIPLEERDADELL 304          
The following BLAST results are available for this feature:
BLAST of CX296561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_PSE142.029e-2450.46Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_ANADE2.029e-2450.46Methylthioribose-1-phosphate isomerase OS=Anaeromy... [more]
MTNA_MICAE2.650e-2451.85Methylthioribose-1-phosphate isomerase OS=Microcys... [more]
MTNA2_THELT2.650e-2450.00Methylthioribose-1-phosphate isomerase 2 OS=Thermo... [more]
YQJQ_CAEEL3.461e-2449.54Uncharacterized protein C01G10.9 OS=Caenorhabditis... [more]
MTNA_THEM43.461e-2452.78Methylthioribose-1-phosphate isomerase OS=Thermosi... [more]
MTNA_MICAN3.461e-2451.85Methylthioribose-1-phosphate isomerase OS=Microcys... [more]
MTNA_NITOC4.521e-2450.46Methylthioribose-1-phosphate isomerase OS=Nitrosoc... [more]
MTNA_ENTS84.521e-2453.70Methylthioribose-1-phosphate isomerase OS=Enteroba... [more]
MTNA_PSEPW5.904e-2452.29Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]

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Properties
Property NameValue
Genbank descriptionC05146B05SK FerrChloL1 Citrus clementina cDNA clone C05146B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296561 ID=CX296561; Name=CX296561; organism=Citrus clementina; type=EST; length=335bp
GAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCACT
GCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACTC
TGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTCG
GAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAACC
TACAGCCTTGCATTATGTGCAAAGTTTCATAATATTCTGTTTTATGTGGC
TGCTCCACTGACGTCAATTGATTTAACCCTTTCTTCTGGACAAGAGATTG
TCATAGAGGAGAGGTCTGCTAAAGAATTGTTGTGC
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