CX296565

Overview
NameCX296565
Unique NameCX296565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.660e-38
Identity = 83/157 (52.87%), Postives = 107/157 (68.15%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YR+     L   ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  100 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.660e-38
Identity = 83/157 (52.87%), Postives = 107/157 (68.15%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YR+     L   ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  100 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.537e-38
Identity = 83/156 (53.21%), Postives = 107/156 (68.59%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA+DP+ FA LKVK IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  101 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.926e-38
Identity = 82/156 (52.56%), Postives = 108/156 (69.23%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YRI  G   ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   40 VIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 194          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.926e-38
Identity = 83/156 (53.21%), Postives = 107/156 (68.59%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA DP+ FA L+VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  100 VIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 83/156 (53.21%), Postives = 108/156 (69.23%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I+   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA DP+ FA +KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   99 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 82/156 (52.56%), Postives = 108/156 (69.23%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    I+   + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+ P  NN
Sbjct:   97 VIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.739e-38
Identity = 84/157 (53.50%), Postives = 106/157 (67.52%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YR+     L   ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   99 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.011e-37
Identity = 83/156 (53.21%), Postives = 107/156 (68.59%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+      ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  100 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.320e-37
Identity = 82/156 (52.56%), Postives = 106/156 (67.95%), Query Frame = -1
Query:  124 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 576
            +IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL  HL+DP  NN
Sbjct:  101 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of CX296565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB22_ARATH2.660e-3852.87Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.660e-3852.87Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB25_TOBAC4.537e-3853.21Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_CUCSA5.926e-3852.56Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_PETSP5.926e-3853.21Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB29_MAIZE7.739e-3853.21Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_SOYBN7.739e-3852.56Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_SINAL7.739e-3853.50Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_NICPL1.011e-3753.21Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB27_TOBAC1.320e-3752.56Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC05146B09SK FerrChloL1 Citrus clementina cDNA clone C05146B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296565 ID=CX296565; Name=CX296565; organism=Citrus clementina; type=EST; length=594bp
CTTGGAAACTGTCTTGATGATGAGATGTACAATGCATTTTAGATTCGAGT
GAAAAGAACACCAGAACAACTGAAATCACAGGGTGGGAGCTCTCTCTGCG
TTTCCGGAGATCACGGTAAGCAAGTTGTTGGCAAAAGGATCACTGAGATG
TTTAGCAAGGTTCTCAACTGGACCTTCACCTGTGACATAAGCTTGGAGAA
AGAAACCAAGCATGGCAAACATTGCAAGTCTTCCATTCTTGATCTCCTTC
ACTTTTAGCAATGCAAATTGGTCAGGATCCTTTGCTAATCCCAGTGGGTC
AAATGGACCACCTGGGTGAAGCTTGTCCTCCAAATCCAAACCGTTGGTGA
TTCTATAATATTCAGCACCACCTACAAGAACAATCTCAGCAATGACAGCA
AAAACAAGGTTGATTGGGATGTTCTTTCCGAAGTAGTTCAATGTGTTTCC
ATCAAGAAGTAGAGCTCCAGTCTTGAACCAGACAGCTTCAGGACCACAGT
TAGCACCAAACTTGTTAAAGGCTTCAGGAATGATGAAACCAGCAGCACCA
AGCATGGCCCATCTGGCATGAATCAATCATATGCCTGATATTTG
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