CX296565

Overview
NameCX296565
Unique NameCX296565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9360 contig Ccv1_Contig9360:427..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = -1
Query:  100 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 576
            LIH RWAML   G +  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA  TG+GP+ N A HLSDP    ++   S +
Sbjct:  141 LIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.384e-23
Identity = 65/161 (40.37%), Postives = 91/161 (56.52%), Query Frame = -1
Query:  100 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 576
            LIH RWAML   G I  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM   LGF +QA  TG+GP+ N A HLSDP    ++   S +
Sbjct:  138 LIHGRWAMLATLGAITVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 63/142 (44.37%), Postives = 85/142 (59.86%), Query Frame = -1
Query:  154 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 576
            LIH RWAMLG  G I  EA             W   G + L++G++  Y G+ +P +L   +  E+++VG  E+ R  + LD E +++PGG FDPLGLA DP++   LK+ EIK+ RLAM A L F LQA  TG+GPV  LA
Sbjct:  142 LIHGRWAMLGTLGAIAVEALTGIA--------WQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVLVVGYIEFQR-NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.915e-20
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = -1
Query:  151 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 576
            LIH RWAML   G ++ EA             W + G + LDG   +Y G ++P ++   +  E++LVGGAE+YR  +  + E + +PGG FDPL LA + ++ A  LK  EIK+ RLAM +  G+ +QA  TGEG + +LAK
Sbjct:  138 LIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAK 269          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 65/165 (39.39%), Postives = 79/165 (47.88%), Query Frame = -1
Query:  136 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT----------------NGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 576
            L+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KEIKNGRLAM A++G + Q   TG GP++NL  HL+DP
Sbjct:  108 LVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 64/165 (38.79%), Postives = 80/165 (48.48%), Query Frame = -1
Query:  136 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT----------------NGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 576
            L+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F            + E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KEIKNGRLAM A++G + Q   TG GP++NL  HL+DP
Sbjct:  108 LVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18
Identity = 58/172 (33.72%), Postives = 86/172 (50.00%), Query Frame = -1
Query:  100 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 576
            L++ RWAMLG AG ++PE F   G    P+  W+  G          YF  +  + ++  +++  V +    +  I N              L   +  +PGG F+PL  A   +     K KEI NGRLAM A LGF +Q  VTG+GP +NL +H+SDP+ N ++  + GN
Sbjct:   96 LVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAGKE-------EYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18
Identity = 63/166 (37.95%), Postives = 87/166 (52.41%), Query Frame = -1
Query:  118 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 576
            L++ RWAMLG AG ++PE F K G    PE  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A  P Q A  K KE+ NGRLAM A LGF +Q  VTG+GP ENL +HLSDP+ N ++
Sbjct:   97 LVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17
Identity = 53/112 (47.32%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  265 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQF 576
            +IH RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D+L+PGG FDPLGLA+DP+ F
Sbjct:   98 VIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNP---NLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15
Identity = 60/168 (35.71%), Postives = 83/168 (49.40%), Query Frame = -1
Query:  103 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-----IPINLVFAVIA---EIVLVGGAEYYRITNGLDL--EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 576
            +++ RWAMLG AG +IPE   K G    PE  W +     L G    YF  +     + ++  +  I    +I   G      I     L   +  +PG  F+PL  A   +     K KE+ NGRLAM A LGF +Q  V G+GP ENL +HL+DP+ N ++  ISG
Sbjct:   76 VVNGRWAMLGVAGMLIPEVLTKAGLMNAPE--WLR-----LPGKE-TYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPLEN-----KEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230          
The following BLAST results are available for this feature:
BLAST of CX296565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB4A_ARATH1.085e-2340.37Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH5.384e-2340.37Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH5.953e-2244.37Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE1.915e-2040.56Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB12_SOLLC1.792e-1839.39Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.341e-1838.79Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA3.993e-1833.72Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH3.993e-1837.95Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_SILPR4.415e-1747.32Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB120_HORVU3.164e-1535.71Chlorophyll a-b binding protein 1B-20, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC05146B09SK FerrChloL1 Citrus clementina cDNA clone C05146B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296565 ID=CX296565; Name=CX296565; organism=Citrus clementina; type=EST; length=594bp
CTTGGAAACTGTCTTGATGATGAGATGTACAATGCATTTTAGATTCGAGT
GAAAAGAACACCAGAACAACTGAAATCACAGGGTGGGAGCTCTCTCTGCG
TTTCCGGAGATCACGGTAAGCAAGTTGTTGGCAAAAGGATCACTGAGATG
TTTAGCAAGGTTCTCAACTGGACCTTCACCTGTGACATAAGCTTGGAGAA
AGAAACCAAGCATGGCAAACATTGCAAGTCTTCCATTCTTGATCTCCTTC
ACTTTTAGCAATGCAAATTGGTCAGGATCCTTTGCTAATCCCAGTGGGTC
AAATGGACCACCTGGGTGAAGCTTGTCCTCCAAATCCAAACCGTTGGTGA
TTCTATAATATTCAGCACCACCTACAAGAACAATCTCAGCAATGACAGCA
AAAACAAGGTTGATTGGGATGTTCTTTCCGAAGTAGTTCAATGTGTTTCC
ATCAAGAAGTAGAGCTCCAGTCTTGAACCAGACAGCTTCAGGACCACAGT
TAGCACCAAACTTGTTAAAGGCTTCAGGAATGATGAAACCAGCAGCACCA
AGCATGGCCCATCTGGCATGAATCAATCATATGCCTGATATTTG
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