CX296565
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23 Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = -1 Query: 100 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 576 LIH RWAML G + E W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S + Sbjct: 141 LIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 5.384e-23 Identity = 65/161 (40.37%), Postives = 91/161 (56.52%), Query Frame = -1 Query: 100 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 576 LIH RWAML G I E W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S + Sbjct: 138 LIHGRWAMLATLGAITVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22 Identity = 63/142 (44.37%), Postives = 85/142 (59.86%), Query Frame = -1 Query: 154 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 576 LIH RWAMLG G I EA W G + L++G++ Y G+ +P +L + E+++VG E+ R + LD E +++PGG FDPLGLA DP++ LK+ EIK+ RLAM A L F LQA TG+GPV LA Sbjct: 142 LIHGRWAMLGTLGAIAVEALTGIA--------WQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVLVVGYIEFQR-NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 1.915e-20 Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = -1 Query: 151 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 576 LIH RWAML G ++ EA W + G + LDG +Y G ++P ++ + E++LVGGAE+YR + + E + +PGG FDPL LA + ++ A LK EIK+ RLAM + G+ +QA TGEG + +LAK Sbjct: 138 LIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAK 269
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18 Identity = 65/165 (39.39%), Postives = 79/165 (47.88%), Query Frame = -1 Query: 136 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT----------------NGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 576 L+H RWAMLGAAG IPE K G P W+ G +T F I E+VL+G AE R N L D +PGG FDPLG P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP Sbjct: 108 LVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18 Identity = 64/165 (38.79%), Postives = 80/165 (48.48%), Query Frame = -1 Query: 136 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT----------------NGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 576 L+H+RWAMLGAAG IPE K G P W+ G +T F + E+VL+G AE R N L D +PGG FDPLG P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP Sbjct: 108 LVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18 Identity = 58/172 (33.72%), Postives = 86/172 (50.00%), Query Frame = -1 Query: 100 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 576 L++ RWAMLG AG ++PE F G P+ W+ G YF + + ++ +++ V + + I N L + +PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+GP +NL +H+SDP+ N ++ + GN Sbjct: 96 LVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAGKE-------EYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18 Identity = 63/166 (37.95%), Postives = 87/166 (52.41%), Query Frame = -1 Query: 118 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 576 L++ RWAMLG AG ++PE F K G PE W+ D YF + + ++ ++ V + + I N G +D + +PGG F+PL A P Q A K KE+ NGRLAM A LGF +Q VTG+GP ENL +HLSDP+ N ++ Sbjct: 97 LVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17 Identity = 53/112 (47.32%), Postives = 68/112 (60.71%), Query Frame = -1 Query: 265 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQF 576 +IH RWAMLGA G + PE K G G EAVWFK G+ + L+Y G NLV A ++A ++VL+G E YR+ G E D+L+PGG FDPLGLA+DP+ F Sbjct: 98 VIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNP---NLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15 Identity = 60/168 (35.71%), Postives = 83/168 (49.40%), Query Frame = -1 Query: 103 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-----IPINLVFAVIA---EIVLVGGAEYYRITNGLDL--EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 576 +++ RWAMLG AG +IPE K G PE W + L G YF + + ++ + I +I G I L + +PG F+PL A + K KE+ NGRLAM A LGF +Q V G+GP ENL +HL+DP+ N ++ ISG Sbjct: 76 VVNGRWAMLGVAGMLIPEVLTKAGLMNAPE--WLR-----LPGKE-TYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPLEN-----KEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230 The following BLAST results are available for this feature:
BLAST of CX296565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296565 ID=CX296565; Name=CX296565; organism=Citrus clementina; type=EST; length=594bpback to top |