CX296565

Overview
NameCX296565
Unique NameCX296565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 55/161 (34.16%), Postives = 77/161 (47.83%), Query Frame = -1
Query:  106 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 576
            + HAR +ML   G I+PE   K          WF+ G  + DG           I L F ++A   +    EY+R   G + +    D+ +PG  FDPL L  D  +      +EIKNGRLAM  +LG   Q   TGE P+ NLA H ++P   N+ T ++
Sbjct:  202 VFHARLSMLAIVGSIVPELLGK--------GAWFEVGNSV-DG-----------IKLGFILMA---IAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTDYTK------REIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANPVGANITTTLA 331          
BLAST of CX296565 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 51/158 (32.28%), Postives = 72/158 (45.57%), Query Frame = -1
Query:  115 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 576
            + H R AML   G I+PE   K          WF+ G  + DG  L +                + +    EY+R   G + +    D+ +PG  FDPL L  D  + A     E+KNGRLA+ A+ G   Q   TGE P+ NL+ HL++P   N+ T
Sbjct:  230 VFHGRLAMLCTVGCIVPELLGK--------GAWFEAGDSV-DGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANITT 357          
The following BLAST results are available for this feature:
BLAST of CX296565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
LH15_EUGGR6.597e-1334.16Light-harvesting complex I LH35 proteins (Fragment... [more]
LH18_EUGGR1.244e-1132.28Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC05146B09SK FerrChloL1 Citrus clementina cDNA clone C05146B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296565 ID=CX296565; Name=CX296565; organism=Citrus clementina; type=EST; length=594bp
CTTGGAAACTGTCTTGATGATGAGATGTACAATGCATTTTAGATTCGAGT
GAAAAGAACACCAGAACAACTGAAATCACAGGGTGGGAGCTCTCTCTGCG
TTTCCGGAGATCACGGTAAGCAAGTTGTTGGCAAAAGGATCACTGAGATG
TTTAGCAAGGTTCTCAACTGGACCTTCACCTGTGACATAAGCTTGGAGAA
AGAAACCAAGCATGGCAAACATTGCAAGTCTTCCATTCTTGATCTCCTTC
ACTTTTAGCAATGCAAATTGGTCAGGATCCTTTGCTAATCCCAGTGGGTC
AAATGGACCACCTGGGTGAAGCTTGTCCTCCAAATCCAAACCGTTGGTGA
TTCTATAATATTCAGCACCACCTACAAGAACAATCTCAGCAATGACAGCA
AAAACAAGGTTGATTGGGATGTTCTTTCCGAAGTAGTTCAATGTGTTTCC
ATCAAGAAGTAGAGCTCCAGTCTTGAACCAGACAGCTTCAGGACCACAGT
TAGCACCAAACTTGTTAAAGGCTTCAGGAATGATGAAACCAGCAGCACCA
AGCATGGCCCATCTGGCATGAATCAATCATATGCCTGATATTTG
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