CX296566
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42 Identity = 91/172 (52.91%), Postives = 119/172 (69.19%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G I+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN Sbjct: 80 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42 Identity = 94/172 (54.65%), Postives = 116/172 (67.44%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN Sbjct: 83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42 Identity = 90/172 (52.33%), Postives = 119/172 (69.19%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G ++ + A+ A ++VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 73 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 243
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.415e-42 Identity = 92/172 (53.49%), Postives = 117/172 (68.02%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G ++ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.415e-42 Identity = 94/175 (53.71%), Postives = 120/175 (68.57%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F++ + E+IH RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G NLV A ++A ++VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN Sbjct: 83 GLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.415e-42 Identity = 90/172 (52.33%), Postives = 118/172 (68.60%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G ++ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.153e-42 Identity = 91/172 (52.91%), Postives = 117/172 (68.02%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G ++ + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.153e-42 Identity = 92/172 (53.49%), Postives = 117/172 (68.02%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F++ + E+IH RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A++VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN Sbjct: 83 GLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANN 253
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 5.379e-42 Identity = 90/172 (52.33%), Postives = 112/172 (65.12%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F KY+ E+IHARWA+LGA G + PE + + E VWFK GA + L+Y G I N+V + ++VL+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+ GFF+QA VTG+GP++NLA HL+DP NN Sbjct: 73 GLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNN 244
BLAST of CX296566 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 7.025e-42 Identity = 90/172 (52.33%), Postives = 117/172 (68.02%), Query Frame = -3 Query: 165 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 665 GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G ++ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVK IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255 The following BLAST results are available for this feature:
BLAST of CX296566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296566 ID=CX296566; Name=CX296566; organism=Citrus clementina; type=EST; length=700bpback to top |