CX296568

Overview
NameCX296568
Unique NameCX296568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   26 VSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVPLK 331
            V+GL++   G WI V P  ++ VVN G Q+EV+TNG  KS+EHR ++ +    R S+A+F  P  + +I PA   L K  E    Y   +F D+M++Y  +K
Sbjct:  223 VNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNS-ALARTSVATFIMPTQECLIGPAKEFLSK--ENPPCYRTTMFRDFMRIYNVVK 321          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:   11 LQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDY 307
            L+ +  SGLQ+ L DG WI VPP   S   N+GD ++V+TNG++KSV HRV++    + R+S+  F  P     I P   L++ E E+  +Y +F + +Y
Sbjct:  206 LRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCK-KSRVSMIYFAGPSLTQRIAPLTCLIDNEDER--LYEEFTWSEY 302          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 2
Query:    5 LALQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMK 313
            + LQDD V GL++L DG+W  V P+  ++V+N+GD    ++NG+YKS  HR +     E R SLA F  P  D V+ P P+     A   Q YP F + D M+
Sbjct:  257 ILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRE-RRSLAFFLCPREDRVVRPPPS-----AATPQHYPDFTWADLMR 352          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 2
Query:    5 LALQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMK 313
            + LQDD V GL++L DG+W  V P+  ++V+N+GD    ++NG+YKS  HR +     E R SLA F  P  D V+ P P+     A   Q YP F + D M+
Sbjct:  257 ILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRE-RRSLAFFLCPREDRVVRPPPS-----AATPQHYPDFTWADLMR 352          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   11 LQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDY 307
            L+ +  SG Q+ L+DG WI VPP   S  +N+GD ++V+TNG++KSV HRV++    + R+S+  F  P     I P P+L++    K+ +Y +F + +Y
Sbjct:  209 LRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLA-NGIDPRLSMIYFCGPPLSEKIAPLPSLMK---GKESLYKEFTWFEY 304          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FL3H_PETHY (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 45/131 (34.35%), Postives = 71/131 (54.20%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLYVP-------LKFQAKEPRFEAMKAVE 376
            L  D+V GLQ  KD    WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   R+S+A+F NP  +A++YP   L  +E EK  +     F +  +  +        LK QAKE + +A  A E
Sbjct:  229 LLQDQVGGLQATKDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSN-SSRLSIATFQNPAPEAIVYP---LKIREGEKSIMDEPITFAEMYRRKMSKDLELARLKKQAKEQQLQAEVAAE 355          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMK 313
            L  D+V GLQ+  D +W  +PP  H+ VVN+GD    +TNG+YKS  HR +  ++ E R + A F  P  + V+ P   L+      ++ YP F +  +++
Sbjct:  255 LHQDQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERE-RKTFAFFLCPKGEKVVKPPEELVNGVKSGERKYPDFTWSMFLE 354          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 37/100 (37.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   11 LQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDY 307
            L+ +  +GLQ+ +KDG W+ VPP   S  +N+GD ++V+TNG++KSV+HRV++ T    R+S+  F  P     I P P L+ ++ +   +Y +F +  Y
Sbjct:  216 LRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADT-RRSRISMIYFGGPPLSQKIAPLPCLVPEQDD--WLYKEFTWSQY 312          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKL 316
            L  ++V GLQ+ KDG W D   + ++++V++GDQ+E+++NGKYKSV HR     + + RMS   F  P  D  + P P L+ +E   K    K+    Y KL
Sbjct:  229 LVPNEVPGLQVYKDGHWYDCKYIPNALIVHIGDQVEIMSNGKYKSVYHRTTVNKE-KTRMSWPVFLEPPPDHEVGPIPKLVNEENPAKFKTKKYKDYAYCKL 329          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNP---GSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKLY 319
            L  D + GLQ+L D  W+DVPP+  ++VVN+GD +++ITN K+ SVEHRV++   G  R+S+A F++     +  V  P   +L +E      Y      +Y K Y
Sbjct:  247 LLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGP-RISVACFFSSYLMANPRVYGPIKEILSEENPPN--YRDTTITEYAKFY 349          
The following BLAST results are available for this feature:
BLAST of CX296568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
IDS3_HORVU4.081e-1339.222'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
G2OX1_ARATH6.961e-1339.00Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
GAOX2_ORYSJ1.187e-1240.78Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI1.187e-1240.78Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
G2OX1_PEA1.187e-1238.00Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
FL3H_PETHY1.187e-1234.35Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
GAOX3_ARATH1.551e-1234.65Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
G2OX2_ARATH1.551e-1237.00Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
FLS_EUSGR1.551e-1238.24Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
ACCH1_ARATH5.893e-1237.741-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionC05146B12SK FerrChloL1 Citrus clementina cDNA clone C05146B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296568 ID=CX296568; Name=CX296568; organism=Citrus clementina; type=EST; length=542bp
GAGGCTTGCTCTTCAGGATGACAAAGTCAGTGGCCTTCAGCTTCTTAAAG
ATGGCCAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAAC
CTCGGTGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGA
GCACAGAGTGATTTCTCAAACCGACGGCGAGGGCCGGATGTCCCTAGCTT
CATTCTACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTG
CTTGAAAAAGAAGCTGAGAAGAAACAAGTGTACCCAAAATTTGTTTTTGA
GGACTACATGAAGCTCTATGTTCCCCTCAAGTTCCAGGCCAAGGAACCAA
GATTTGAAGCCATGAAAGCTGTGGAAACTAATGTTAACTTGGGTCCAATT
GCCACCGCTTAAACTATTATTTTATAGCCAAATTATTTTTATCTGCTGGA
GTGGTGTGACATCCATTTATATTATTTGTAGACAGTAACAAATGTAACTA
CTCTGTGATAGTAGTCTCTTCCAAATAAAGGGGGGGCCCGGT
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