CX296568

Overview
NameCX296568
Unique NameCX296568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 2
Query:    5 LALQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFY--NPGSDAVIY-PAPALLEKEAEKK 274
            + LQDD + GLQ+L    W+DVPP   S+VVN+GD +++++N KY SVEHR IS   G  RMS+  F+  +P   + +Y P   LL ++   K
Sbjct:  244 ILLQDD-MGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVG-SRMSITCFFGESPYQSSKLYGPITELLSEDNPPK 334          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVI 232
            L  D+V GLQL+KD +WI V P   ++++N+GD  +  +NG YKSVEHRV++    E R S A F  P  DAVI
Sbjct:  224 LYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVE-RFSTAYFMCPSYDAVI 296          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMKL 316
            L  + V GLQ  KDG+W DV  + +++V+++GDQ+E+++NGKY SV HR     D + R+S   F  P +D V+ P P L+    + K    K+    Y K+
Sbjct:  232 LVPNDVQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKD-KTRISWPVFLEPPADHVVGPHPQLVNAVNQPKYKTKKYGDYVYCKI 332          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FL3H_PETCR (Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMK 313
            L  D+V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   RMS+A+F NP  +A +YP   L  +E EK  +     F +  K
Sbjct:  227 LLQDQVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSN-SSRMSIATFQNPAPNATVYP---LKIREGEKAVMEEPITFAEMYK 325          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 38/130 (29.23%), Postives = 70/130 (53.85%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP------APALLEKEAEKKQVYPKFVFEDYMKLYVPLKFQAKEPRFEAMKAVE 376
            L  D+V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +  +    R+S+A+F NP  +A++YP        +++E+     ++Y K +  D     +    + K+   E +K ++
Sbjct:  224 LLQDQVGGLQATRDGGESWITVKPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNS-STSRLSIATFQNPAPEAIVYPLKINEGEKSIMEEPMTFMEMYKKKMSTDLELARLKKLAKDKQQDLEVVKPIQ 352          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFEDYMK 313
            L  D+V GLQ  +D    WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   R+S+A+F NP  DA +YP   L  +E EK  +     F +  K
Sbjct:  226 LLQDQVGGLQATRDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSN-SSRLSIATFQNPAPDATVYP---LKVREGEKAILEEPITFAEMYK 324          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 34/102 (33.33%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPG---SDAVIYPAPALLEKEAEKKQVYPKFVFEDY 307
            L  D++ GLQ+ ++G W DVP +  ++++N+GD +++ITN K+ S+EHRV++      R+S+A F+  G   +  +  P   L+ +E   K  Y +   +DY
Sbjct:  250 LLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPK--YRETTIKDY 349          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 2
Query:   26 VSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKE 262
            V GL++   G WI V P+ +S+V+N G Q+EV+TNG  K+VEHR  +    E R+S+ASF  P  D V+ PA   + ++
Sbjct:  222 VPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNF-AEPRLSVASFIVPADDCVVGPAEEFVSED 299          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FL3H_DIACA (Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEKKQVYPKFVFED 304
            L  D+V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   R+S+A+F NP  DA +YP   L  +E E   +     F D
Sbjct:  227 LLQDQVGGLQATRDGGKTWITVQPVPGAFVVNLGDHGHFLSNGRFKNADHQAVVNSEC-SRLSIATFQNPSPDATVYP---LAIREGENSIMEEPITFAD 322          
BLAST of CX296568 vs. ExPASy Swiss-Prot
Match: FL3H_VITVI (Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis vinifera GN=F3H PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   11 LQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPALLEKEAEK 271
            L  D+V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   R+S+A+F NP  +A +YP   L  +E EK
Sbjct:  227 LLQDQVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSN-HSRLSIATFQNPAPEATVYP---LKIREGEK 311          
The following BLAST results are available for this feature:
BLAST of CX296568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ACCH3_SOLLC7.697e-1243.011-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G2OX8_ARATH1.005e-1148.65Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
FLS_MALDO1.005e-1137.25Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
FL3H_PETCR1.005e-1136.89Flavanone 3-dioxygenase OS=Petroselinum crispum GN... [more]
FL3H_CALCH1.715e-1129.23Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]
FL3H_ARATH2.925e-1135.92Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
ACCH3_ARATH2.925e-1133.331-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
IDS2_HORVU3.820e-1143.04Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
FL3H_DIACA3.820e-1137.00Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthu... [more]
FL3H_VITVI4.989e-1139.33Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis v... [more]

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Properties
Property NameValue
Genbank descriptionC05146B12SK FerrChloL1 Citrus clementina cDNA clone C05146B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296568 ID=CX296568; Name=CX296568; organism=Citrus clementina; type=EST; length=542bp
GAGGCTTGCTCTTCAGGATGACAAAGTCAGTGGCCTTCAGCTTCTTAAAG
ATGGCCAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAAC
CTCGGTGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGA
GCACAGAGTGATTTCTCAAACCGACGGCGAGGGCCGGATGTCCCTAGCTT
CATTCTACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTG
CTTGAAAAAGAAGCTGAGAAGAAACAAGTGTACCCAAAATTTGTTTTTGA
GGACTACATGAAGCTCTATGTTCCCCTCAAGTTCCAGGCCAAGGAACCAA
GATTTGAAGCCATGAAAGCTGTGGAAACTAATGTTAACTTGGGTCCAATT
GCCACCGCTTAAACTATTATTTTATAGCCAAATTATTTTTATCTGCTGGA
GTGGTGTGACATCCATTTATATTATTTGTAGACAGTAACAAATGTAACTA
CTCTGTGATAGTAGTCTCTTCCAAATAAAGGGGGGGCCCGGT
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