CX296572

Overview
NameCX296572
Unique NameCX296572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296572_ssr444 microsatellite CX296572_ssr444:444..458. BLAST: Citrus ESTs to Prunus persica proteins V1
CX296572_ssr586 microsatellite CX296572_ssr586:586..600. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.129e-23
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I  +KK+G   W  + K     R GK CR RW N+L P++K+  +++EE+  I   H +LGNRW+ IA  LPGRTDN +KN W++ +K+K
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.129e-23
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I  + K+G   W  + K     R GK CR RW N+L PD+K+ ++++EE+  I + H  +GNRW+ IA  LPGRTDN IKN W++ +K+K
Sbjct:   84 LVKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKG-RIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRK 186          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.129e-23
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   76 EKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            +K  L KG WT EEDR+LI  ++K+G   W  +  Q    R GK CR RW N+LRPDIK+  +S+EE+  +I  H  +GN+W+ IA RLPGRT+N IKN W+   +++
Sbjct:  211 KKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIA-QVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 317          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.062e-22
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I  + K+G   W  + K     R GK CR RW N+L P++K+ ++++EE+ TI   H  LGNRW+ IA  LPGRTDN IKN W++ +++K
Sbjct:   87 LIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.811e-22
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   94 KGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            KGPW+PEED  L   + K+G  NW  + K     R GKSCRLRW N L P ++   FS EE+ETI   H   GN+W+ IA  L GRTDN +KN W++ LK+K
Sbjct:    6 KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.089e-22
Identity = 51/117 (43.59%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKA--AAVLKQNQKA 432
            L KGPWT EED+ +I  ++K+G   W  + K     R GK CR RW N+L P++K+ ++++EE+  I   H  LGNRW+ IA  LPGRTDN IKN W++ +++K      L+++ KA
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 205          

HSP 2 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = 1
Query:   58 GRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAARLPGRTDNEIKNVWHTHL 390
            G  P   K  L K  WT EED  L   ++++G  +W+ +       R    C+ RW   L P++ +G ++KEE++ +I L    G  RWS IA  L GR   + +  WH HL
Sbjct:   28 GLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 138          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.089e-22
Identity = 51/117 (43.59%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKA--AAVLKQNQKA 432
            L KGPWT EED+ +I  ++K+G   W  + K     R GK CR RW N+L P++K+ ++++EE+  I   H  LGNRW+ IA  LPGRTDN IKN W++ +++K      L+++ KA
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 205          

HSP 2 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 40/114 (35.09%), Postives = 58/114 (50.88%), Query Frame = 1
Query:   58 GRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLL--RCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAARLPGRTDNEIKNVWHTHL 390
            G  P   K  L K  WT EED  L   ++++G  +W+ +   A  L  R    C+ RW   L P++ +G ++KEE++ +I L    G  RWS IA  L GR   + +  WH HL
Sbjct:   28 GLLPKAGKRHLGKTRWTREEDEKLKKLVEQNGTEDWKVI---ASFLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 138          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.089e-22
Identity = 51/117 (43.59%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKKA--AAVLKQNQKA 432
            L KGPWT EED+ +I  ++K+G   W  + K     R GK CR RW N+L P++K+ ++++EE+  I   H  LGNRW+ IA  LPGRTDN IKN W++ +++K      L+++ KA
Sbjct:   90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKA 205          

HSP 2 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = 1
Query:   58 GRAPCCEKMGLKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAARLPGRTDNEIKNVWHTHL 390
            G  P   K  L K  WT EED  L   ++++G  +W+ +       R    C+ RW   L P++ +G ++KEE++ +I L    G  RWS IA  L GR   + +  WH HL
Sbjct:   28 GLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 138          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.089e-22
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I  ++K+G   W  + K     R GK CR RW N+L P++K+ ++++EE+  I   H  LGNRW+ IA  LPGRTDN IKN W++ +++K
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CX296572 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.089e-22
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   88 LKKGPWTPEEDRILIAHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKK 399
            L KGPWT EED+ +I  ++K+G   W  + K     R GK CR RW N+L P++K+ ++++EE+  I   H  LGNRW+ IA  LPGRTDN IKN W++ +++K
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
The following BLAST results are available for this feature:
BLAST of CX296572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYBB_HUMAN8.129e-2347.12Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYBA_XENLA8.129e-2347.12Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYB98_ARATH8.129e-2347.22Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYB_XENLA1.062e-2247.12Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYB44_ARATH1.811e-2250.00Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYB_HUMAN3.089e-2243.59Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK3.089e-2243.59Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN3.089e-2243.59Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBA_MOUSE3.089e-2246.15Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN3.089e-2246.15Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05146C04SK FerrChloL1 Citrus clementina cDNA clone C05146C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296572 ID=CX296572; Name=CX296572; organism=Citrus clementina; type=EST; length=741bp
CCGGGCTGCAGATTCGGCCGAGGAGTACTCCACTACTTTGAAAGAATTAA
CAAGATGGGGAGGGCTCCCTGCTGTGAGAAGATGGGATTGAAGAAGGGGC
CATGGACTCCTGAAGAAGATAGAATTTTAATCGCCCACATCAAAAAACAC
GGCCATCCCAATTGGCGTGCGTTACCAAAGCAAGCCGGTTTGTTGAGATG
TGGAAAGAGTTGCAGACTCCGATGGATAAATTACTTGAGGCCTGATATTA
AGAGGGGAAACTTCAGCAAAGAAGAAGAGGAAACTATCATCAACTTGCAT
GACATGTTGGGGAATAGGTGGTCAGCTATCGCAGCAAGGTTACCAGGAAG
GACAGATAATGAGATTAAAAACGTGTGGCACACGCACTTGAAGAAGAAAG
CAGCAGCAGTACTGAAGCAAAACCAGAAGGCCAATACTAATACTAATAAT
AATAATAATTCGGATGATCACAAACAAAACTCTAAAGCAACAACAGCTCA
TGATCATCAGTCTGCAGAATCTGCAATGTCTCCCCAGGCATCATCTTCCA
GTGATGAGCTCTCCTCGGTCACTACTGGAGAAACAAATAATAATAATAAT
AGTGATCGGTACTGCATGGATAAGTATGTGAAAGGTGATCATGAGCAAAA
TGTTGACTCGTTTGAAAGTTTTCCTGTGATTGATGAAAGCTTCTGGACAG
ACACCAGCTTATCTGAAAATTTCAGCATTTGACATCAGATT
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