CX296593

Overview
NameCX296593
Unique NameCX296593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9336 contig Ccv1_Contig9336:662..1185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.065e-31
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.391e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.391e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.817e-31
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.817e-31
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.372e-31
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.372e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CX296593 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = -2 
Query:  225 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 434
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
The following BLAST results are available for this feature:
BLAST of CX296593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_ACECL1.065e-3195.71Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR1.391e-3197.14Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_ACACA1.391e-3197.14Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY1.817e-3195.71Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL1.817e-3195.71Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_EUPEU2.372e-3195.71Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_AGLNE2.372e-3195.71Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA3.099e-3195.71Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR3.099e-3195.71Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_SHEEP3.099e-3195.71Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC05146E05SK FerrChloL1 Citrus clementina cDNA clone C05146E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296593 ID=CX296593; Name=CX296593; organism=Citrus clementina; type=EST; length=525bp
GAGGCCTCGTGCCGAATTCGGCACGAGGTTTAAACTAGAGTTTTTTATTC
AAAAGCATAACTCGTTCAACAAACAACAACATATAAAAACAAAAGACCAT
ATTATCAATTATAACTAGTCTTCTTCAAGAAGACAAAGACAACATAAGGA
CCATCTTGAACAGAAAAGACATTGACACGGGGCGCAGTGAATCCCCCTCA
GAAACCACCACCTCGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCT
GAATGTTGTAATCAGCCAGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCG
AAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTT
GGCTTTGACATTGTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCG
TCTTCCCGGTCAATGTCTTAACAAAAATCTGCATGCCACCCCTCAGACGC
AAAACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGCGT
CCTTCCATCCTCCAGCTGCTTGCCA
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